Variant report

Variant	esv1090769
Chromosome Location	chr1:227143726-227144760
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:227143600..227145701-chr1:227151650..227153893,2	K562	blood:
2	chr1:227135011..227140362-chr1:227140387..227143822,8	K562	blood:

Variant related genes	Relation type
ENSG00000163050	chromatin interactions

Extended variants
information (count: 45 )
Associated
traits (count: 90 )

Variant overlapped rSNPs/rCNVs (count:45 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs71570479	chr1:227143746-227143747	Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
2	rs368006123	chr1:227143750-227143751	Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs562269127	chr1:227143766-227143767	Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs186051391	chr1:227143851-227143852	Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs191423786	chr1:227143876-227143877	Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs56371037	chr1:227143919-227143920	Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs370050841	chr1:227143936-227143937	Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs200226572	chr1:227143956-227143957	Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs568928835	chr1:227143966-227143967	Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs199611788	chr1:227143982-227143983	Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs141876767	chr1:227143984-227143985	Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs551342473	chr1:227144003-227144004	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs55975703	chr1:227144050-227144051	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs112550343	chr1:227144073-227144074	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs534287466	chr1:227144074-227144075	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs375241302	chr1:227144114-227144115	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs555280434	chr1:227144121-227144122	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs376191521	chr1:227144125-227144126	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs573731374	chr1:227144139-227144140	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs2777838	chr1:227144171-227144172	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs201284512	chr1:227144194-227144195	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs34922163	chr1:227144266-227144267	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs35188554	chr1:227144269-227144270	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs375502914	chr1:227144288-227144289	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs556461244	chr1:227144335-227144336	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs111699357	chr1:227144425-227144426	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs577986143	chr1:227144487-227144488	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs111931949	chr1:227144526-227144527	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs373047574	chr1:227144528-227144529	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs572056672	chr1:227144584-227144585	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs200521366	chr1:227144593-227144594	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs28711686	chr1:227144599-227144600	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs200165786	chr1:227144613-227144614	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs200875775	chr1:227144639-227144640	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs562167378	chr1:227144664-227144665	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs529458043	chr1:227144669-227144670	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs199949882	chr1:227144672-227144673	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs544388519	chr1:227144688-227144689	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs369387655	chr1:227144698-227144699	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs71570480	chr1:227144699-227144700	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs181936878	chr1:227144707-227144708	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs373924251	chr1:227144728-227144729	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs116360423	chr1:227144729-227144730	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs202136241	chr1:227144753-227144754	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs150082748	chr1:227144760-227144761	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:90)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Autism	22495311	CNVD
Melanoma	18172304	CNVD
Rett syndrome	21593744	CNVD
Medulloblastoma	21979893	CNVD
Cancer	20164919	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Non-small cell lung cancer	21044232	CNVD
Cervical cancer	21063398	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	20632083	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	21264507	CNVD
Liposarcoma	21253554	CNVD
Multiple myeloma	21628407	CNVD
Cancer	16751803	CNVD
Prostate cancer	16705090	CNVD
Neuroblastoma	19435921	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16461572	CNVD
Intracranial tumor	16823260	CNVD
Medulloblastoma	18056178	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Breast cancer	17603634	CNVD
Neuroblastoma	21899760	CNVD
Breast cancer	21858162	CNVD
Non-small cell lung cancer	21385341	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	16608533	CNVD
Ewing''s sarcoma	22429812	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17001317	CNVD
Acute myeloid leukemia	21251322	CNVD
Multiple myeloma	17550852	CNVD
Prostate cancer	18632612	CNVD
Acute myeloid leukemia	20729466	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Testicular germ cell tumor	18059402	CNVD
Ependymoma	18628472	CNVD
Leukemia	18628472	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Breast cancer	21509527	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Urothelial carcinoma	21177765	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Chordoma	18071362	CNVD
T-cell lymphomas	19863542	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hepatocellular carcinoma	18803288	CNVD
Urothelial tumor	18831757	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Basal cell lymphoma	17170743	CNVD
Mental retardation	19951919	CNVD
Non-syndromic sensorineural hearing loss	17873649	CNVD
Basal cell lymphoma	17053054	CNVD
Autism	14699429	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Fumarase deficiency	21572526	CNVD
Autism	17483303	CNVD
Kartagener syndrome	16639409	CNVD
Congenital abnormalities	21549014	CNVD
Developmental delay	21549014	CNVD
Mental retardation	21549014	CNVD
small cell lung cancer	20016488	CNVD
Glioblastoma multiforme	21138945	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Cancer	20164920	CNVD
Cancer	17060936	CNVD
Myelofibrosis	22110671	CNVD
abnormal development	18461090	CNVD
Breast cancer	21364760	CNVD
Acute lymphoblastic leukemia	22237106	CNVD

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:227129000-227162600	Weak transcription	Fetal Kidney	kidney
2	chr1:227130200-227145600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr1:227130200-227146000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr1:227130400-227154600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr1:227131000-227171800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr1:227131400-227153800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr1:227131800-227147200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr1:227133000-227146200	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr1:227133200-227149800	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr1:227134400-227144800	Weak transcription	Fetal Intestine Large	intestine
11	chr1:227134400-227151800	Weak transcription	Small Intestine	intestine
12	chr1:227134400-227153000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr1:227134600-227150200	Weak transcription	Duodenum Mucosa	Duodenum
14	chr1:227134800-227145000	Weak transcription	Brain Substantia Nigra	brain
15	chr1:227134800-227149000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr1:227134800-227150200	Weak transcription	Brain Angular Gyrus	brain
17	chr1:227135000-227150600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr1:227135200-227149800	Weak transcription	Colon Smooth Muscle	Colon
19	chr1:227135200-227152600	Weak transcription	Colonic Mucosa	Colon
20	chr1:227135200-227158000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr1:227135400-227146800	Weak transcription	Stomach Mucosa	stomach
22	chr1:227136200-227144800	Weak transcription	Brain Hippocampus Middle	brain
23	chr1:227136200-227145200	Weak transcription	Brain Anterior Caudate	brain
24	chr1:227136200-227152800	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr1:227136400-227146600	Weak transcription	Primary B cells from peripheral blood	blood
26	chr1:227136400-227149200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr1:227137000-227146200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr1:227137400-227150400	Weak transcription	Aorta	Aorta
29	chr1:227137800-227146600	Weak transcription	Primary T helper cells PMA-I stimulated	--
30	chr1:227138000-227149000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr1:227138000-227152000	Weak transcription	Brain Cingulate Gyrus	brain
32	chr1:227138400-227147800	Weak transcription	Primary T cells from cord blood	blood
33	chr1:227139200-227151600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr1:227139400-227149800	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr1:227139400-227150600	Weak transcription	Primary B cells from cord blood	blood
36	chr1:227140000-227150200	Weak transcription	Monocytes-CD14+_RO01746	blood
37	chr1:227140000-227152200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr1:227140000-227152800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr1:227140000-227153000	Weak transcription	Primary neutrophils fromperipheralblood	blood
40	chr1:227141400-227149600	Weak transcription	Stomach Smooth Muscle	stomach
41	chr1:227141600-227144800	Weak transcription	Psoas Muscle	Psoas
42	chr1:227141800-227145200	Weak transcription	Liver	Liver
43	chr1:227142200-227157800	Weak transcription	Fetal Lung	lung
44	chr1:227142400-227144000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
45	chr1:227142400-227149200	Weak transcription	Fetal Muscle Trunk	muscle
46	chr1:227142800-227146000	Weak transcription	Right Atrium	heart
47	chr1:227142800-227146000	Weak transcription	Spleen	Spleen
48	chr1:227142800-227148600	Weak transcription	Ovary	ovary
49	chr1:227142800-227149400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr1:227142800-227152200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links