Variant report
Variant | esv11187 |
---|---|
Chromosome Location | chr5:117880229-117881004 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs56698697 | chr5:117880421-117880422 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
2 | rs543270622 | chr5:117880427-117880428 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
3 | rs57449241 | chr5:117880452-117880453 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
4 | rs72795552 | chr5:117880454-117880455 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
5 | rs545207804 | chr5:117880464-117880465 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
6 | rs79794146 | chr5:117880469-117880470 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
7 | rs66500274 | chr5:117880480-117880481 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
8 | rs72795554 | chr5:117880490-117880491 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
9 | rs188125968 | chr5:117880508-117880509 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
10 | rs72795555 | chr5:117880514-117880515 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
11 | rs147261898 | chr5:117880561-117880562 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
12 | rs550023479 | chr5:117880568-117880569 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
13 | rs532798970 | chr5:117880587-117880588 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
14 | rs62370364 | chr5:117880628-117880629 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
15 | rs10050514 | chr5:117880635-117880636 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
16 | rs10058452 | chr5:117880670-117880671 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
17 | rs73788938 | chr5:117880690-117880691 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
18 | rs144593772 | chr5:117880691-117880692 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
19 | rs147965630 | chr5:117880695-117880696 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
20 | rs542657033 | chr5:117880707-117880708 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
21 | rs113440158 | chr5:117880756-117880757 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
22 | rs373785410 | chr5:117880757-117880758 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
23 | rs70982432 | chr5:117880764-117880765 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
24 | rs148203928 | chr5:117880765-117880766 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
25 | rs73788940 | chr5:117880791-117880792 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
26 | rs73788941 | chr5:117880799-117880800 | Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
27 | rs545341441 | chr5:117880808-117880809 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
28 | rs565115791 | chr5:117880811-117880812 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
29 | rs371216646 | chr5:117880826-117880827 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
30 | rs530641824 | chr5:117880845-117880846 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
31 | rs527915102 | chr5:117880855-117880856 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
32 | rs541088810 | chr5:117880867-117880868 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
33 | rs10050645 | chr5:117880873-117880874 | Weak transcription Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
34 | rs529647275 | chr5:117880875-117880876 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
35 | rs549500232 | chr5:117880878-117880879 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
36 | rs72795558 | chr5:117880897-117880898 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
37 | rs570665006 | chr5:117880903-117880904 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
38 | rs10058652 | chr5:117880970-117880971 | Weak transcription Enhancers | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
39 | rs565844672 | chr5:117880988-117880989 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
40 | rs112860225 | chr5:117880991-117880992 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
41 | rs368330493 | chr5:117880992-117880993 | Weak transcription Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Metanephric adenoma | 20802469 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Phyllodes tumor | 17334353 | CNVD |
Malaria | 21533027 | CNVD |
Renal cell carcinoma | 19461508 | CNVD |
Cancer | 20164919 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Cancer | 16751803 | CNVD |
Intellectual disability | 22102821 | CNVD |
Breast cancer | 17603634 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Melanoma | 18172304 | CNVD |
Glioma | 20126413 | CNVD |
Cancer | 22429812 | CNVD |
Cancer | 21637783 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
Liposarcoma | 21253554 | CNVD |
Acute lymphoblastic leukemia | 21390130 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Breast cancer | 21858162 | CNVD |
Leukemia | 17361228 | CNVD |
Myelodysplastic syndrome | 18508791 | CNVD |
5q-syndrome | 17576883 | CNVD |
Gastric cancer | 17908304 | CNVD |
Lung cancer | 16740712 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Esophageal adenocarcinoma | 19417022 | CNVD |
Barrett''s syndrome | 19417022 | CNVD |
Lung cancer | 18438408 | CNVD |
Bipolar disorder | 18458673 | CNVD |
Thyroid cancer | 19087340 | CNVD |
Breast cancer | 21785460 | CNVD |
Squamous cell cancer | 20885788 | CNVD |
Hepatocellular carcinoma | 16750200 | CNVD |
Neurodevelopmental disorder | 22521361 | CNVD |
Prostate cancer | 18632612 | CNVD |
Breast cancer | 17133270 | CNVD |
Acute myeloid leukemia | 20729466 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Acute myeloid leukemia | 21251322 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Cancer | 20164920 | CNVD |
Myelodysplastic syndrome | 21251322 | CNVD |
Colorectal cancer | 16272173 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Hodgkin''s lymphoma | 18641027 | CNVD |
Multiple myeloma | 17550852 | CNVD |
Ovarian cancer | 21720365 | CNVD |
Salivary gland tumor | 18059337 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Renal cell carcinoma | 19377443 | CNVD |
Prostate cancer | 16461572 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Esophageal squamous carcinoma | 17470683 | CNVD |
Glaucoma | 21310917 | CNVD |
Glioblastoma multiforme | 22286061 | CNVD |
Gastrointestinal stromal cancer | 19259404 | CNVD |
Breast cancer | 21509527 | CNVD |
Autism | 22543975 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr5:117880400-117880800 | Enhancers | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
2 | chr5:117880400-117881000 | Enhancers | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |
3 | chr5:117880800-117884200 | Weak transcription | Bone Marrow Derived Cultured Mesenchymal Stem Cells | Bone marrow |
4 | chr5:117881000-117884200 | Weak transcription | Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells | embryonic stem cell |