Variant report

Variant	esv11772
Chromosome Location	chr7:64550072-64568299
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF273-7	chr7:64563733-64563817	NONHSAT121075
2	lnc-ZNF273-7	chr7:64552258-64552330	NONHSAT121075

Extended variants
information (count: 1008 )
Associated
traits (count: 81 )

Variant overlapped rSNPs/rCNVs (count:1008 , 50 per page) page: 1 2 3 4 5 6 7 ... 21

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs191564731	chr7:64550137-64550138	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs62454964	chr7:64550182-64550183	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs113158522	chr7:64550195-64550196	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs553217151	chr7:64550199-64550200	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs55778450	chr7:64550201-64550202	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
6	rs188048060	chr7:64550207-64550208	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs544979692	chr7:64550241-64550242	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs558560779	chr7:64550248-64550249	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs575637611	chr7:64550331-64550332	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs138123166	chr7:64550336-64550337	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs561226574	chr7:64550351-64550352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs189528821	chr7:64550374-64550375	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs542861878	chr7:64550388-64550389	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs369967949	chr7:64550434-64550435	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs559660380	chr7:64550435-64550436	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs561160236	chr7:64550498-64550499	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs372056589	chr7:64550503-64550504	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs201010942	chr7:64550539-64550540	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs551381700	chr7:64550540-64550541	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs386713983	chr7:64550547-64550548	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs386713984	chr7:64550548-64550549	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs138381591	chr7:64550549-64550550	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs567264681	chr7:64550593-64550594	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs80345647	chr7:64550596-64550597	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs71569604	chr7:64550619-64550620	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs563586294	chr7:64550621-64550622	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs117477965	chr7:64550672-64550673	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs145943331	chr7:64550696-64550697	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs183273005	chr7:64550747-64550748	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs558674626	chr7:64550756-64550757	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs368519436	chr7:64550778-64550779	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs575544567	chr7:64550796-64550797	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs537863380	chr7:64550806-64550807	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs538365755	chr7:64550828-64550829	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs6959107	chr7:64550847-64550848	Weak transcription Strong transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
36	rs574859630	chr7:64550852-64550853	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs566068029	chr7:64550881-64550882	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs542824823	chr7:64550918-64550919	Weak transcription Strong transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs2419264	chr7:64551038-64551039	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs573167071	chr7:64551056-64551057	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs545368385	chr7:64551064-64551065	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs187603606	chr7:64551094-64551095	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs574900783	chr7:64551122-64551123	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs530490897	chr7:64551152-64551153	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs550326677	chr7:64551207-64551208	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs559883807	chr7:64551371-64551372	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs561014728	chr7:64551516-64551517	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs141330755	chr7:64551607-64551608	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs192171482	chr7:64551668-64551669	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs566768622	chr7:64551669-64551670	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:81)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Follicular lymphoma	20505157	CNVD
Biliary cancer	19435499	CNVD
Williams-beuren syndrome	22470819	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Glioblastoma	21080181	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Astrocytoma	22246337	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
Acute monocytic leukemia	16498392	CNVD
Prostate cancer	16461572	CNVD
Salivary gland tumor	18059337	CNVD
Multiple myeloma	17550852	CNVD
Acute myeloid leukemia	21251322	CNVD
small cell lung cancer	20016488	CNVD
Bladder cancer	21909424	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
small cell lung cancer	17426248	CNVD
Cognitive impairment	21505072	CNVD
Schizophrenia	20967226	CNVD
Cancer	21272361	CNVD
Hodgkin''s lymphoma	17606441	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:64541600-64557200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:64541600-64561200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:64542000-64552400	Weak transcription	Lung	lung
4	chr7:64542000-64554400	Weak transcription	Psoas Muscle	Psoas
5	chr7:64542000-64562200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr7:64542000-64563200	Weak transcription	Left Ventricle	heart
7	chr7:64542000-64571000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:64542200-64553000	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr7:64542200-64553200	Weak transcription	Brain Angular Gyrus	brain
10	chr7:64542200-64554400	Weak transcription	Brain Substantia Nigra	brain
11	chr7:64542200-64555000	Weak transcription	Brain Anterior Caudate	brain
12	chr7:64542200-64555000	Weak transcription	Fetal Lung	lung
13	chr7:64542200-64555200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr7:64542200-64557200	Weak transcription	Esophagus	oesophagus
15	chr7:64542200-64558400	Weak transcription	Fetal Intestine Large	intestine
16	chr7:64542200-64559000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr7:64542200-64560600	Weak transcription	Aorta	Aorta
18	chr7:64542200-64561400	Weak transcription	Liver	Liver
19	chr7:64542200-64561400	Weak transcription	Fetal Muscle Leg	muscle
20	chr7:64542200-64561600	Weak transcription	Pancreas	Pancrea
21	chr7:64542200-64563800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
22	chr7:64542200-64567000	Weak transcription	Right Ventricle	heart
23	chr7:64542200-64568200	Weak transcription	Adipose Nuclei	Adipose
24	chr7:64542400-64553000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr7:64542400-64553200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr7:64542400-64553200	Weak transcription	Ovary	ovary
27	chr7:64542400-64553400	Weak transcription	Spleen	Spleen
28	chr7:64542400-64554200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr7:64542400-64555400	Weak transcription	Fetal Intestine Small	intestine
30	chr7:64542400-64558600	Weak transcription	Right Atrium	heart
31	chr7:64542400-64558800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr7:64542400-64559800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr7:64542400-64560600	Weak transcription	Placenta	Placenta
34	chr7:64542400-64561000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr7:64542400-64562600	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr7:64542400-64562800	Weak transcription	K562	blood
37	chr7:64542400-64565400	Weak transcription	Fetal Brain Female	brain
38	chr7:64542400-64565600	Weak transcription	HSMMtube	muscle
39	chr7:64542400-64573400	Weak transcription	Skeletal Muscle Female	skeletal muscle
40	chr7:64546600-64558600	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr7:64546800-64550400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr7:64549600-64564600	Weak transcription	Brain Cingulate Gyrus	brain
43	chr7:64550400-64551000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr7:64550400-64566800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr7:64551000-64553000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr7:64553000-64553600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr7:64553000-64553600	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr7:64553000-64553800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr7:64553200-64553800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr7:64553200-64553800	Strong transcription	Brain Angular Gyrus	brain

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