Variant report

Variant	esv11854
Chromosome Location	chr7:57285004-57289467
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF716-10	chr7:57285833-57285918	NONHSAT120826
2	lnc-ZNF716-10	chr7:57285335-57285589	NONHSAT120826
3	lnc-ZNF716-10	chr7:57285590-57285595	FPKM1_group_29782_transcript_2
4	lnc-ZNF716-10	chr7:57285590-57285649	NONHSAT120825

Extended variants
information (count: 89 )
Associated
traits (count: 83 )

Variant overlapped rSNPs/rCNVs (count:89 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs112386269	chr7:57285011-57285012	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs112935399	chr7:57285037-57285038	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs113729504	chr7:57285040-57285041	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs113700686	chr7:57285048-57285049	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs113287192	chr7:57285051-57285052	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs111989486	chr7:57285061-57285062	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs111361431	chr7:57285064-57285065	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs74914168	chr7:57285087-57285088	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs529817064	chr7:57285091-57285092	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs547928825	chr7:57285125-57285126	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs560304351	chr7:57285141-57285142	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs527484011	chr7:57285142-57285143	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs552548946	chr7:57285181-57285182	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs537600357	chr7:57285201-57285202	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs367691308	chr7:57285234-57285235	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs570734761	chr7:57285259-57285260	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs367833173	chr7:57285262-57285263	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs532582789	chr7:57285325-57285326	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs140179650	chr7:57285339-57285340	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
20	rs549585351	chr7:57285342-57285343	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
21	rs567978377	chr7:57285376-57285377	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
22	rs371281837	chr7:57285378-57285379	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
23	rs191383863	chr7:57285418-57285419	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
24	rs554759363	chr7:57285420-57285421	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
25	rs183629460	chr7:57285437-57285438	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
26	rs539512176	chr7:57285438-57285439	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
27	rs187181586	chr7:57285441-57285442	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
28	rs553984048	chr7:57285487-57285488	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
29	rs371747179	chr7:57285506-57285507	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
30	rs577136245	chr7:57285517-57285518	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
31	rs56136135	chr7:57285540-57285541	ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs555742007	chr7:57285546-57285547	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
33	rs574310351	chr7:57285562-57285563	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
34	rs541947879	chr7:57285566-57285567	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
35	rs559988367	chr7:57285580-57285581	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
36	rs145697940	chr7:57285581-57285582	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
37	rs147713837	chr7:57285587-57285588	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
38	rs564237366	chr7:57285601-57285602	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a
39	rs35625601	chr7:57285623-57285624	ZNF genes & repeats	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
40	rs191679033	chr7:57285675-57285676	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs374809689	chr7:57285684-57285685	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
42	rs569276184	chr7:57285694-57285695	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
43	rs185231309	chr7:57285744-57285745	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
44	rs6966163	chr7:57285753-57285754	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs112736909	chr7:57285775-57285776	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
46	rs566837269	chr7:57285787-57285788	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
47	rs533995905	chr7:57285791-57285792	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
48	rs34593540	chr7:57285792-57285793	ZNF genes & repeats	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs570663683	chr7:57285819-57285820	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
50	rs538156781	chr7:57285850-57285851	ZNF genes & repeats	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:83)

Disease	PMID	Source
Neuroblastoma	18923191	CNVD
Wilms tumour	21544195	CNVD
Glioma	21971842	CNVD
Glioblastoma multiforme	21080181	CNVD
Liposarcoma	21253554	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
colon cancer	17210682	CNVD
Lung adenocarcinoma	21810691	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Colorectal cancer	19359472	CNVD
Hypothalamic hamartomas	18252217	CNVD
Human rectal carcinomas	16397240	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Medulloblastoma	18056178	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Autism	22495311	CNVD
Biliary cancer	19435499	CNVD
Cancer	21183584	CNVD
Follicular lymphoma	20505157	CNVD
Williams-beuren syndrome	22470819	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
Lung cancer	18438408	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21364760	CNVD
Esophageal cancer	21851588	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Intracranial ependymoma	16609018	CNVD
Lung cancer	21911935	CNVD
Urothelial cell carcinoma	18451213	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	19455253	CNVD
Lung cancer	17925434	CNVD
Glioma	24330732	CNVD
Lung adenocarcinoma	23938291	CNVD
Glioma	17634744	CNVD
Oral squamous cell carcinoma	19276369	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Lung cancer	20031968	CNVD
Glioblastoma	17090523	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Glioma	17123091	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Medullary thyroid carcinoma	18765511	CNVD
small cell lung cancer	20016488	CNVD
Williams Syndrome	20824207	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:57283400-57285600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:57284600-57286200	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:57284800-57285200	ZNF genes & repeats	HepG2	liver
4	chr7:57286200-57286800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links