Variant report

Variant	esv1213079
Chromosome Location	chr19:19832771-19832772
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 46 )

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs36021998	chr19:19832772-19832773	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:46)

Disease	PMID	Source
Prostate cancer	16573809	CNVD
Lung cancer	17297452	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Medulloblastoma	16783165	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Basal cell lymphoma	21115979	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Breast cancer	21364760	CNVD
Acute monocytic leukemia	16498392	CNVD
Lung cancer	18438408	CNVD
Breast cancer	20409316	CNVD
Cancer	17160897	CNVD
Cancer	17440070	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Breast cancer	21509527	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:19811600-19833200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr19:19813400-19833000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
3	chr19:19814200-19833200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr19:19814600-19833000	ZNF genes & repeats	Adipose Nuclei	Adipose
5	chr19:19815800-19833200	ZNF genes & repeats	Brain Hippocampus Middle	brain
6	chr19:19817600-19833200	ZNF genes & repeats	Dnd41	blood
7	chr19:19818400-19833800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr19:19820000-19833000	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
9	chr19:19828400-19843200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr19:19828600-19838200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr19:19829800-19837800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr19:19831000-19837400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr19:19831000-19842600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr19:19831200-19843000	Weak transcription	NH-A	brain
15	chr19:19831800-19833000	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
16	chr19:19832000-19833200	ZNF genes & repeats	Fetal Brain Male	brain
17	chr19:19832000-19833400	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr19:19832200-19833000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
19	chr19:19832200-19833200	ZNF genes & repeats	HSMM	muscle
20	chr19:19832400-19833200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
21	chr19:19832400-19833200	ZNF genes & repeats	Ovary	ovary
22	chr19:19832600-19833200	ZNF genes & repeats	Fetal Kidney	kidney
23	chr19:19832600-19833400	ZNF genes & repeats	Fetal Intestine Large	intestine
24	chr19:19832600-19833800	ZNF genes & repeats	Fetal Lung	lung
25	chr19:19832600-19835000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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