Variant report

Variant	esv12298
Chromosome Location	chr11:51567562-51594097
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:8)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:51570648..51572733-chr18:74448847..74450348,2	K562	blood:
2	chr11:51571654..51572156-chrX:61838804..61839307,2	MCF-7	breast:
3	chr1:205090687..205091190-chr11:51572148..51572834,2	MCF-7	breast:
4	chr11:51590843..51591840-chr2:513508..514508,2	MCF-7	breast:
5	chr11:51570628..51572150-chr6:149317397..149318917,2	MCF-7	breast:

(count:8 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-OR4A5-3	chr11:51578567-51578806	NONHSAT021351
2	lnc-OR4A5-3	chr11:51593152-51593158	FPKM1_group_4638_transcript_1
3	lnc-OR4A5-3	chr11:51593152-51593221	NONHSAT021351
4	lnc-OR4C46-2	chr11:51573408-51573440	NONHSAT021350
5	lnc-OR4C46-2	chr11:51575662-51575709	NONHSAT021350
6	lnc-OR4C46-2	chr11:51571014-51571024	NONHSAT021350
7	lnc-OR4C46-2	chr11:51569667-51570142	NONHSAT021350
8	lnc-OR4A5-3	chr11:51578567-51578806	FPKM1_group_4638_transcript_1

No data

Variant related genes	Relation type
ENSG00000117222	chromatin interactions

Extended variants
information (count: 5103 )
Associated
traits (count: 42 )

Variant overlapped rSNPs/rCNVs (count:5103 , 50 per page) page: 1 2 3 4 5 6 7 ... 103

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs569013713	chr11:51567569-51567570	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
2	rs372234000	chr11:51567570-51567571	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
3	rs533364590	chr11:51567574-51567575	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
4	rs146631835	chr11:51567579-51567580	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
5	rs113407753	chr11:51567583-51567584	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
6	rs143031409	chr11:51567584-51567585	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
7	rs148634299	chr11:51567592-51567593	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
8	rs145276839	chr11:51567595-51567596	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
9	rs567011438	chr11:51567596-51567597	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
10	rs77089374	chr11:51567600-51567601	ZNF genes & repeats Weak transcription Bivalent/Poised TSS	n/a	n/a	Overlapped CNVs	n/a
11	rs199919522	chr11:51567602-51567603	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs112826837	chr11:51567609-51567610	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs144448270	chr11:51567611-51567612	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs534270216	chr11:51567615-51567616	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs199998252	chr11:51567622-51567623	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs144425504	chr11:51567624-51567625	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs75514555	chr11:51567630-51567631	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs371377928	chr11:51567640-51567641	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs7481659	chr11:51567642-51567643	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs7483887	chr11:51567653-51567654	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs7480034	chr11:51567664-51567665	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs370409229	chr11:51567672-51567673	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs200235421	chr11:51567679-51567680	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs61892669	chr11:51567682-51567683	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs61892670	chr11:51567689-51567690	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs556819670	chr11:51567702-51567703	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs142604894	chr11:51567706-51567707	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs369550383	chr11:51567711-51567712	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs78749796	chr11:51567712-51567713	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs201515003	chr11:51567714-51567715	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs7479351	chr11:51567722-51567723	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs373425410	chr11:51567723-51567724	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs376565822	chr11:51567729-51567730	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs545826701	chr11:51567730-51567731	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs557317901	chr11:51567731-51567732	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs199577279	chr11:51567732-51567733	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs375759423	chr11:51567733-51567734	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs77628858	chr11:51567734-51567735	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs572633569	chr11:51567738-51567739	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs201218234	chr11:51567741-51567742	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs191247102	chr11:51567751-51567752	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs61892671	chr11:51567754-51567755	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs199721542	chr11:51567755-51567756	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs368821931	chr11:51567766-51567767	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs200765798	chr11:51567767-51567768	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs539960630	chr11:51567768-51567769	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs376616572	chr11:51567775-51567776	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs561410476	chr11:51567778-51567779	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs71484857	chr11:51567784-51567785	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs546676537	chr11:51567786-51567787	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:42)

Disease	PMID	Source
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Renal cell carcinoma	18194544	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Follicular lymphoma	20505157	CNVD
Colorectal cancer	21128281	CNVD
Glioblastoma multiforme	21138945	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21990379	CNVD
small cell lung cancer	20016488	CNVD
Esophageal cancer	21851588	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	17142309	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ovarian clear cell carcinoma	21343371	CNVD

Chromatin state (count:865 , 50 per page) page: 1 2 3 4 5 6 7 ... 18

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:51567200-51567600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:51567200-51567600	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:51567200-51567600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:51567200-51567600	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
5	chr11:51567200-51567600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
6	chr11:51567200-51567600	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
7	chr11:51567200-51567600	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
8	chr11:51567200-51567600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
9	chr11:51567200-51567600	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
10	chr11:51567200-51567600	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
11	chr11:51567200-51567600	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
12	chr11:51567200-51567600	ZNF genes & repeats	Brain Anterior Caudate	brain
13	chr11:51567200-51567600	ZNF genes & repeats	Brain Hippocampus Middle	brain
14	chr11:51567200-51567600	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
15	chr11:51567200-51567600	ZNF genes & repeats	Colonic Mucosa	Colon
16	chr11:51567200-51567600	ZNF genes & repeats	Colon Smooth Muscle	Colon
17	chr11:51567200-51567600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
18	chr11:51567200-51567600	ZNF genes & repeats	Fetal Heart	heart
19	chr11:51567200-51567600	ZNF genes & repeats	Fetal Lung	lung
20	chr11:51567200-51567600	ZNF genes & repeats	Fetal Muscle Trunk	muscle
21	chr11:51567200-51567600	ZNF genes & repeats	Fetal Muscle Leg	muscle
22	chr11:51567200-51567600	ZNF genes & repeats	Fetal Stomach	stomach
23	chr11:51567200-51567600	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
24	chr11:51567200-51567600	ZNF genes & repeats	Right Ventricle	heart
25	chr11:51567200-51567600	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
26	chr11:51567200-51567600	ZNF genes & repeats	Stomach Mucosa	stomach
27	chr11:51567200-51567600	ZNF genes & repeats	Stomach Smooth Muscle	stomach
28	chr11:51567200-51567600	ZNF genes & repeats	Dnd41	blood
29	chr11:51567200-51567600	ZNF genes & repeats	Hela-S3	cervix
30	chr11:51567200-51567600	ZNF genes & repeats	HMEC	breast
31	chr11:51567200-51567600	ZNF genes & repeats	HSMM	muscle
32	chr11:51567200-51567800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:51567200-51567800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
34	chr11:51567200-51567800	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
35	chr11:51567200-51567800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
36	chr11:51567200-51567800	ZNF genes & repeats	Rectal Smooth Muscle	rectum
37	chr11:51567200-51568000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
38	chr11:51567200-51568000	ZNF genes & repeats	NH-A	brain
39	chr11:51567200-51568400	ZNF genes & repeats	Fetal Brain Male	brain
40	chr11:51567200-51568800	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
41	chr11:51567200-51568800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
42	chr11:51567200-51568800	ZNF genes & repeats	HUVEC	blood vessel
43	chr11:51567200-51570000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr11:51567200-51570200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr11:51567200-51570200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:51567200-51570200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
47	chr11:51567200-51570200	ZNF genes & repeats	Adipose Nuclei	Adipose
48	chr11:51567200-51570200	ZNF genes & repeats	Brain Angular Gyrus	brain
49	chr11:51567200-51570200	ZNF genes & repeats	Fetal Intestine Large	intestine
50	chr11:51567200-51570200	ZNF genes & repeats	Left Ventricle	heart

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