Variant report
Variant | esv12451 |
---|---|
Chromosome Location | chr6:142110591-142114931 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr6:141998460..141999421-chr6:142110108..142110780,4 | MCF-7 | breast: |
No data |
No data |
No data |
No data |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs552497916 | chr6:142110605-142110606 | Weak transcription Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
2 | rs564347245 | chr6:142110646-142110647 | Weak transcription Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
3 | rs551581124 | chr6:142110703-142110704 | Weak transcription Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
4 | rs146411927 | chr6:142110729-142110730 | Weak transcription Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
5 | rs374206088 | chr6:142110741-142110742 | Weak transcription Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
6 | rs547411279 | chr6:142110752-142110753 | Weak transcription Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
7 | rs12210846 | chr6:142110766-142110767 | Weak transcription Enhancers ZNF genes & repeats | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
8 | rs534265187 | chr6:142110796-142110797 | Weak transcription Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
9 | rs565790823 | chr6:142110855-142110856 | Weak transcription Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
10 | rs553889044 | chr6:142110876-142110877 | Weak transcription Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
11 | rs573933865 | chr6:142110921-142110922 | Weak transcription Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
12 | rs536091691 | chr6:142110943-142110944 | Weak transcription Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
13 | rs547987361 | chr6:142110949-142110950 | Weak transcription Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
14 | rs181231245 | chr6:142110967-142110968 | Weak transcription Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
15 | rs368387894 | chr6:142110970-142110971 | Weak transcription Enhancers ZNF genes & repeats | n/a | n/a | Overlapped CNVs | n/a |
16 | rs7450452 | chr6:142111017-142111018 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
17 | rs534707536 | chr6:142111029-142111030 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs187149079 | chr6:142111043-142111044 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs535304105 | chr6:142111046-142111047 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs142680110 | chr6:142111139-142111140 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs375764024 | chr6:142111176-142111177 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs542401525 | chr6:142111202-142111203 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs563876204 | chr6:142111269-142111270 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs576314895 | chr6:142111302-142111303 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs9496142 | chr6:142111329-142111330 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
26 | rs145931958 | chr6:142111354-142111355 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs369660339 | chr6:142111403-142111404 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs547669694 | chr6:142111416-142111417 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs376029480 | chr6:142111421-142111422 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs559265671 | chr6:142111448-142111449 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs529938268 | chr6:142111506-142111507 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs9484552 | chr6:142111531-142111532 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
33 | rs537129865 | chr6:142111554-142111555 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs552021943 | chr6:142111592-142111593 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs375652660 | chr6:142111642-142111643 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs370989088 | chr6:142111643-142111644 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs534367702 | chr6:142111689-142111690 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs191578366 | chr6:142111723-142111724 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs568730019 | chr6:142111761-142111762 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs536170423 | chr6:142111771-142111772 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs148612009 | chr6:142111786-142111787 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs575936682 | chr6:142111831-142111832 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs577677292 | chr6:142111861-142111862 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs141181209 | chr6:142111940-142111941 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs558008777 | chr6:142111942-142111943 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs559164204 | chr6:142111965-142111966 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs540225470 | chr6:142112025-142112026 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs575909781 | chr6:142112045-142112046 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs150755259 | chr6:142112063-142112064 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs34142348 | chr6:142112066-142112067 | Enhancers Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Uveal melanoma | 21693616 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Biliary cancer | 19435499 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Malaria | 21533027 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Autism | 21448237 | CNVD |
Autism | 22495311 | CNVD |
Biliary cancer | 20360734 | CNVD |
Breast cancer | 20360734 | CNVD |
Coronary artery disease | 20360734 | CNVD |
Crohn''s disease | 20360734 | CNVD |
Hypertension | 20360734 | CNVD |
Rheumatoid arthritis | 20360734 | CNVD |
Type 1 diabetes | 20360734 | CNVD |
Type 2 diabetes | 20360734 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Melanoma | 18172304 | CNVD |
Cancer | 21637783 | CNVD |
Gastric cancer | 17908304 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Follicular lymphoma | 19010834 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Hepatocellular carcinoma | 22174799 | CNVD |
Phyllodes tumor | 17334353 | CNVD |
Breast cancer | 16608533 | CNVD |
Non-small cell lung cancer | 21385341 | CNVD |
Prostate cancer | 16705090 | CNVD |
Adenoid cystic carcinoma | 17372589 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Ependymoma | 16718352 | CNVD |
High-proliferative meningiomas | 17937814 | CNVD |
Intracranial tumor | 16823260 | CNVD |
Monoclonal gammopathy of undetermined significance | 17077331 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Breast cancer | 16272173 | CNVD |
Wilms tumour | 21544195 | CNVD |
Acute lymphoblastic leukemia | 20067559 | CNVD |
Zellweger syndrome | 21572526 | CNVD |
Follicular lymphoma | 20505157 | CNVD |
Congenital diaphragmatic hernia | 21085971 | CNVD |
Malignant melanoma | 18718029 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
Lung cancer | 18438408 | CNVD |
Breast cancer | 21858162 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Primary central nervous system lymphoma | 21088137 | CNVD |
Breast cancer | 17603634 | CNVD |
Chondromyxoid Fibroma | 20696777 | CNVD |
Cancer | 21183584 | CNVD |
Developmental delay | 19490664 | CNVD |
Burkitt''s lymphoma | 18698080 | CNVD |
Follicular lymphoma | 18703704 | CNVD |
Neurodevelopmental disorder | 22521361 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Adenoid cystic carcinoma | 18698036 | CNVD |
head and neck squamous cell carcinoma | 17671120 | CNVD |
Leukemia | 18688285 | CNVD |
Breast cancer | 21364760 | CNVD |
Renal cell carcinoma | 18592004 | CNVD |
T-cell prolymphocytic leukemia | 17713554 | CNVD |
Malignant melanoma | 17260012 | CNVD |
Prostate cancer | 18632612 | CNVD |
low-grade B-cell lymphoma tumor | 18367492 | CNVD |
Acute monocytic leukemia | 16498392 | CNVD |
Endocrine pancreatic tumor | 17914106 | CNVD |
Soft tissue tumor | 16732325 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Intellectual disability | 22045946 | CNVD |
craniofacial dysmorphism | 21918468 | CNVD |
Acute lymphoblastic leukemia | 21339820 | CNVD |
early-passage human iPS cells | 21368824 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr6:142107200-142111800 | Weak transcription | HUES6 Cell Line | embryonic stem cell |
2 | chr6:142107200-142112200 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
3 | chr6:142107400-142111800 | Weak transcription | HUES48 Cell Line | embryonic stem cell |
4 | chr6:142110600-142110800 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
5 | chr6:142110600-142111000 | ZNF genes & repeats | Pancreas | Pancrea |
6 | chr6:142110800-142111000 | Enhancers | iPS-20b Cell Line | embryonic stem cell |
7 | chr6:142111000-142111800 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |
8 | chr6:142111800-142112600 | Enhancers | HUES48 Cell Line | embryonic stem cell |
9 | chr6:142111800-142112600 | Enhancers | HUES6 Cell Line | embryonic stem cell |
10 | chr6:142111800-142112800 | Enhancers | iPS-20b Cell Line | embryonic stem cell |
11 | chr6:142112200-142112600 | Enhancers | iPS-15b Cell Line | embryonic stem cell |
12 | chr6:142112200-142112600 | Enhancers | iPS-18 Cell Line | embryonic stem cell |
13 | chr6:142112800-142115400 | Weak transcription | iPS-20b Cell Line | embryonic stem cell |