Variant report

Variant	esv1265248
Chromosome Location	chr1:246940790-246940795
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:246940112..246942102-chr1:247093044..247095026,2	K562	blood:
2	chr1:246933982..246937125-chr1:246938877..246940973,4	K562	blood:
3	chr1:246940232..246941968-chr1:246942195..246944093,2	K562	blood:
4	chr1:246940173..246942753-chr1:246943130..246945283,2	MCF-7	breast:
5	chr1:246935414..246937125-chr1:246938877..246940791,2	K562	blood:

Variant related genes	Relation type
ENSG00000260855	chromatin interactions
ENSG00000153207	chromatin interactions

Extended variants
information (count: 2 )
Associated
traits (count: 84 )

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs66929931	chr1:246940791-246940792	Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs72448872	chr1:246940795-246940796	Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:84)

Disease	PMID	Source
Esophageal squamous carcinoma	21637470	CNVD
HIV/AIDS	22032296	CNVD
Schizophrenia	19415332	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	17133270	CNVD
Non-small cell lung cancer	21044232	CNVD
Cervical cancer	21063398	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	20632083	CNVD
Endometrial cancer	22040021	CNVD
Ewing''s sarcoma	21437220	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	21080181	CNVD
Hepatocellular carcinoma	22174799	CNVD
Medulloblastoma	21292688	CNVD
Phyllodes tumor	17334353	CNVD
Breast cancer	21264507	CNVD
Liposarcoma	21253554	CNVD
Multiple myeloma	21628407	CNVD
Cancer	16751803	CNVD
Prostate cancer	16705090	CNVD
Neuroblastoma	19435921	CNVD
Breast cancer	17850661	CNVD
Breast cancer	16461572	CNVD
Intracranial tumor	16823260	CNVD
Medulloblastoma	18056178	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Colorectal cancer	16272173	CNVD
Neuroblastoma	21899760	CNVD
Acute lymphoblastic leukemia	21980252	CNVD
Breast cancer	16608533	CNVD
Ewing''s sarcoma	22429812	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17001317	CNVD
Acute myeloid leukemia	20729466	CNVD
Testicular germ cell tumor	18059402	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Breast cancer	21509527	CNVD
Urothelial carcinoma	21177765	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Hepatocellular carcinoma	18803288	CNVD
Urothelial tumor	18831757	CNVD
Lung cancer	18438408	CNVD
Medulloblastoma	16783165	CNVD
Basal cell lymphoma	17170743	CNVD
Basal cell lymphoma	17053054	CNVD
Congenital abnormalities	21549014	CNVD
Developmental delay	21549014	CNVD
Mental retardation	21549014	CNVD
small cell lung cancer	20016488	CNVD
Cancer	20164920	CNVD
Cancer	17060936	CNVD
abnormal development	18461090	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Non-small cell lung cancer	21829676	CNVD
Multiple myeloma	16616336	CNVD
Ovarian cancer	21720365	CNVD
Glioblastoma multiforme	22291905	CNVD
Myelofibrosis	22110671	CNVD
Disease	21936942	CNVD
laryngomalacia	21936942	CNVD
GLUT3 deficiency syndrome	20509907	CNVD
Developmental delay	21373258	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Developmental delay	19490664	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Cutaneous malignant melanoma	18794153	CNVD
Astrocytoma	17934521	CNVD
Neurocytoma	17123091	CNVD
Central neurocytomas	17123091	CNVD
Breast cancer	20409316	CNVD
Fibroblasts	17951408	CNVD
Lung cancer	17951408	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:246888400-246946400	Weak transcription	Small Intestine	intestine
2	chr1:246888600-246945600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
3	chr1:246895000-246942200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr1:246902800-246952800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:246904600-246942800	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr1:246905000-246945800	Weak transcription	Psoas Muscle	Psoas
7	chr1:246920800-246944200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr1:246921200-246943200	Strong transcription	Dnd41	blood
9	chr1:246921600-246945800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr1:246922200-246944600	Strong transcription	Fetal Muscle Trunk	muscle
11	chr1:246923200-246945000	Strong transcription	Fetal Muscle Leg	muscle
12	chr1:246924000-246941200	Strong transcription	Primary monocytes fromperipheralblood	blood
13	chr1:246924000-246944200	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr1:246924400-246945800	Weak transcription	Primary B cells from cord blood	blood
15	chr1:246925200-246952200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr1:246928800-246944800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr1:246932400-246945800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr1:246932400-246952000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr1:246932600-246948000	Strong transcription	Liver	Liver
20	chr1:246932600-246948600	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr1:246932600-246948600	Weak transcription	Esophagus	oesophagus
22	chr1:246932800-246945000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr1:246932800-246945600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr1:246932800-246945800	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr1:246932800-246948800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chr1:246932800-246952400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr1:246932800-246956400	Weak transcription	H9 Cell Line	embryonic stem cell
28	chr1:246933200-246945800	Weak transcription	Colon Smooth Muscle	Colon
29	chr1:246933600-246941200	Strong transcription	Adipose Nuclei	Adipose
30	chr1:246934400-246941000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr1:246934400-246944800	Strong transcription	Fetal Intestine Large	intestine
32	chr1:246934600-246944200	Strong transcription	HSMM	muscle
33	chr1:246934800-246940800	Strong transcription	HepG2	liver
34	chr1:246934800-246941000	Strong transcription	HSMMtube	muscle
35	chr1:246937000-246940800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr1:246937000-246944000	Weak transcription	Placenta Amnion	Placenta Amnion
37	chr1:246937800-246941000	Strong transcription	Primary hematopoietic stem cells	blood
38	chr1:246937800-246941200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr1:246937800-246941200	Strong transcription	Duodenum Mucosa	Duodenum
40	chr1:246938000-246943000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
41	chr1:246938200-246940800	Strong transcription	Duodenum Smooth Muscle	Duodenum
42	chr1:246938400-246940800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr1:246938400-246940800	Strong transcription	Brain Inferior Temporal Lobe	brain
44	chr1:246938400-246942400	Strong transcription	Fetal Thymus	thymus
45	chr1:246938400-246944200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr1:246938400-246944400	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr1:246938400-246945800	Strong transcription	Fetal Stomach	stomach
48	chr1:246938400-246947200	Strong transcription	Fetal Intestine Small	intestine
49	chr1:246938600-246940800	Strong transcription	Primary neutrophils fromperipheralblood	blood
50	chr1:246938600-246940800	Strong transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links