Variant report
| Variant | esv1296704 |
|---|---|
| Chromosome Location | chr12:56032843-56032850 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:56031467..56034083-chr12:56034247..56036022,2 | K562 | blood: |
(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-ITGA7-1 | chr12:56032696-56033100 | ENSG00000258921.1 |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs377175264 | chr12:56032845-56032846 | Weak transcription Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
| 2 | rs79454391 | chr12:56032846-56032847 | Weak transcription Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
| 3 | rs60883686 | chr12:56032849-56032850 | Weak transcription Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
| 4 | rs78842054 | chr12:56032850-56032851 | Weak transcription Enhancers | lncRNA | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:74)
| Disease | PMID | Source |
|---|---|---|
| Seminomas | 18059402 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| Lung cancer | 20668451 | CNVD |
| Breast cancer | 20668451 | CNVD |
| Cancer | 20668451 | CNVD |
| Ovarian cancer | 20668451 | CNVD |
| Pancreas cancer | 20668451 | CNVD |
| Prostate cancer | 20668451 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Testicular germ cell tumor | 18059402 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Malaria | 21533027 | CNVD |
| Chronic lymphocytic leukemia | 22228453 | CNVD |
| Basal cell lymphoma | 17053054 | CNVD |
| Chronic lymphocytic leukemia | 21670202 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Autism | 22495311 | CNVD |
| Neurodevelopmental disorder | 22521361 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Renal cell carcinoma | 18194544 | CNVD |
| Breast cancer | 21949216 | CNVD |
| Carcinoma ex pleomorphic adenoma | 18828159 | CNVD |
| Acute myeloid leukemia | 16864856 | CNVD |
| Cancer | 21637783 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Renal cell carcinoma | 19461508 | CNVD |
| Burkitt''s lymphoma | 18698080 | CNVD |
| Astrocytoma | 17387387 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Glioblastoma multiforme | 19960244 | CNVD |
| Gastrointestinal stromal cancer | 20470368 | CNVD |
| Adenoid cystic carcinoma | 17372589 | CNVD |
| Hirschsprung''s Disease | 21712996 | CNVD |
| Lissencephaly | 21572526 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Adenoid cystic carcinoma | 18698036 | CNVD |
| Breast cancer | 19602461 | CNVD |
| Breast cancer | 17899364 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Follicular lymphoma | 20505157 | CNVD |
| Hepatocellular carcinoma | 16750200 | CNVD |
| Melanoma | 18172304 | CNVD |
| Metanephric adenoma | 20802469 | CNVD |
| Glioblastoma multiforme | 17387387 | CNVD |
| liposarcomas | 17372913 | CNVD |
| Non-small cell lung cancer | 24170126 | CNVD |
| Cancer | 16751803 | CNVD |
| Hodgkin''s lymphoma | 18641027 | CNVD |
| Bladder cancer | 21909424 | CNVD |
| Intracranial aneurysm | 16715129 | CNVD |
| Breast cancer | 17661082 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| low-grade B-cell lymphoma tumor | 18367492 | CNVD |
| Breast cancer | 21785460 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Hodgkin''s lymphoma | 18179710 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Autism | 20531469 | CNVD |
| Multiple myeloma | 16616336 | CNVD |
| Rhabdomyosarcoma | 16790082 | CNVD |
| Renal cell carcinoma | 18765545 | CNVD |
| Urothelial cell carcinoma | 18451213 | CNVD |
| Glioblastoma multiforme | 21138945 | CNVD |
| Glioblastoma multiforme | 21569311 | CNVD |
| Pancreatic ductal adenocarcinoma | 19077451 | CNVD |
| Breast cancer | 22522925 | CNVD |
| Cancer | 20164919 | CNVD |
| early-passage human iPS cells | 21368824 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:56023200-56036800 | Weak transcription | Spleen | Spleen |
| 2 | chr12:56025800-56035200 | Enhancers | Primary neutrophils fromperipheralblood | blood |
| 3 | chr12:56030800-56035800 | Weak transcription | Primary T helper cells PMA-I stimulated | -- |
| 4 | chr12:56031000-56033800 | Weak transcription | Primary monocytes fromperipheralblood | blood |
| 5 | chr12:56031000-56034400 | Weak transcription | Monocytes-CD14+_RO01746 | blood |
| 6 | chr12:56031000-56035200 | Weak transcription | Left Ventricle | heart |
| 7 | chr12:56032200-56036200 | Weak transcription | Primary T helper memory cells from peripheral blood 1 | blood |
| 8 | chr12:56032600-56036000 | Weak transcription | Primary T helper 17 cells PMA-I stimulated | -- |
| 9 | chr12:56032800-56040000 | Weak transcription | Right Atrium | heart |
