Variant report
Variant | esv1303557 |
---|---|
Chromosome Location | chr18:44927273-44927899 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
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No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs77910153 | chr18:44927277-44927278 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs577013995 | chr18:44927281-44927282 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs545971129 | chr18:44927284-44927285 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
4 | rs559425209 | chr18:44927288-44927289 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs78298978 | chr18:44927294-44927295 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs369862395 | chr18:44927316-44927317 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs35055178 | chr18:44927319-44927320 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs200177594 | chr18:44927346-44927347 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs373832864 | chr18:44927358-44927359 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs35190053 | chr18:44927363-44927364 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs11660456 | chr18:44927405-44927406 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs548468946 | chr18:44927407-44927408 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs34717639 | chr18:44927430-44927431 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs376777468 | chr18:44927441-44927442 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs562069473 | chr18:44927446-44927447 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs530877819 | chr18:44927471-44927472 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs34790119 | chr18:44927476-44927477 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs551141946 | chr18:44927484-44927485 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs74459262 | chr18:44927505-44927506 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs539677824 | chr18:44927558-44927559 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs200860481 | chr18:44927565-44927566 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs192606119 | chr18:44927575-44927576 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs576444550 | chr18:44927590-44927591 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs375754377 | chr18:44927593-44927594 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs76127374 | chr18:44927599-44927600 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs369892987 | chr18:44927607-44927608 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs79995685 | chr18:44927610-44927611 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs373086344 | chr18:44927623-44927624 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs74491454 | chr18:44927632-44927633 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs377621870 | chr18:44927637-44927638 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs78319032 | chr18:44927654-44927655 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs371260331 | chr18:44927694-44927695 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs374743594 | chr18:44927699-44927700 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs368805782 | chr18:44927722-44927723 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs371503270 | chr18:44927733-44927734 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs566924517 | chr18:44927738-44927739 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs374231717 | chr18:44927762-44927763 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs368093614 | chr18:44927810-44927811 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs113195990 | chr18:44927813-44927814 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs76533678 | chr18:44927828-44927829 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs535762273 | chr18:44927843-44927844 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs77803186 | chr18:44927846-44927847 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs199913632 | chr18:44927849-44927850 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs377603864 | chr18:44927858-44927859 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs183232214 | chr18:44927868-44927869 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs61298456 | chr18:44927870-44927871 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs369388073 | chr18:44927888-44927889 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs201461490 | chr18:44927899-44927900 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Follicular lymphoma | 20505157 | CNVD |
Chordoma | 21602918 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Neuroblastoma | 18923191 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Cancer | 21637783 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Splenic marginal zone lymphoma | 21957467 | CNVD |
Trisomy 18 syndrome | 17576883 | CNVD |
lymphocytic leukemia | 21291569 | CNVD |
Barrett''s syndrome | 19417022 | CNVD |
Ewing''s sarcoma | 17952124 | CNVD |
Multiple myeloma | 17550852 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Melanoma | 18172304 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Acute lymphoblastic leukemia | 17690704 | CNVD |
18q deletion syndrome | 19533772 | CNVD |
Acute myeloid leukemia | 16864856 | CNVD |
Colorectal cancer | 21102417 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Pancreatic cancer | 21811562 | CNVD |
Basal cell lymphoma | 21115979 | CNVD |
Mucosa-associated lymphoid tissue lymphomas | 21459788 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Oligodendroglial tumors | 17285580 | CNVD |
colon cancer | 17210682 | CNVD |
Breast cancer | 21785460 | CNVD |
Prostate cancer | 16573809 | CNVD |
Autism | 16446308 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Human rectal carcinomas | 16397240 | CNVD |
Medulloblastoma | 18056178 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Cancer | 16751803 | CNVD |
Metanephric adenoma | 20802469 | CNVD |
small cell lung cancer | 20016488 | CNVD |
Invasive pancreatic ductal carcinoma | 16982739 | CNVD |
Colorectal cancer | 21297112 | CNVD |
Breast cancer | 17603634 | CNVD |
Thyroid cancer | 19087340 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Oral cancer | 21386901 | CNVD |
Colorectal cancer | 19150955 | CNVD |
Acute myeloid leukemia | 21251322 | CNVD |
Colorectal cancer | 16912164 | CNVD |
Lung cancer | 18438408 | CNVD |
Seminomas | 18059402 | CNVD |
Breast cancer | 16272173 | CNVD |
Breast cancer | 17133270 | CNVD |
prenatal diagnosis | 22389664 | CNVD |
Medulloblastoma | 16783165 | CNVD |
Neuroblastoma | 21508638 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Multiple myeloma | 16461302 | CNVD |
Chronic lymphocytic leukemia | 21049055 | CNVD |
Breast cancer | 16397240 | CNVD |
Non-small cell lung cancer | 21829676 | CNVD |
T-cell acute lymphoblastic leukemia | 19406988 | CNVD |
Pilomyxoid astrocytoma | 17436254 | CNVD |
Mental retardation | 21062444 | CNVD |
Cancer | 21183584 | CNVD |
Burkitt''s lymphoma | 18698080 | CNVD |
Esophageal adenocarcinoma | 18519675 | CNVD |
Acute lymphoblastic leukemia | 21339820 | CNVD |
Basal cell lymphoma | 19029149 | CNVD |
Diffuse large b-cell lymphoma | 19029149 | CNVD |
Cancer | 17160897 | CNVD |
Congenital anomalies of the kidney and urinary tract | 20467480 | CNVD |
Gastric cancer | 16891809 | CNVD |
Idiopathic thrombocytopenic purpura | 19566914 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
Basal cell lymphoma | 17170743 | CNVD |
Follicular lymphoma | 17170743 | CNVD |
Primary mediastinal b-cell lymphoma | 17728785 | CNVD |
Colorectal cancer | 16774939 | CNVD |
Endometrioid adenocarcinoma | 16974079 | CNVD |
Lung cancer | 21569311 | CNVD |
Acute lymphoblastic leukemia | 20435627 | CNVD |
Cancer | 20164919 | CNVD |
Intellectual disability | 21811512 | CNVD |
Breast cancer | 22522925 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr18:44925000-44929600 | Weak transcription | Pancreas | Pancrea |