Variant report

Variant	esv13182
Chromosome Location	chr10:42661833-42667100
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 843 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:843 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs202247064	chr10:42661833-42661834	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs551906284	chr10:42661840-42661841	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs200465226	chr10:42661842-42661843	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs528212705	chr10:42661845-42661846	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs201140617	chr10:42661850-42661851	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs568000564	chr10:42661852-42661853	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs537019029	chr10:42661862-42661863	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs550230933	chr10:42661863-42661864	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs199531505	chr10:42661867-42661868	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs78885718	chr10:42661873-42661874	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs200700315	chr10:42661880-42661881	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs200372880	chr10:42661884-42661885	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs570318758	chr10:42661885-42661886	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs201153703	chr10:42661888-42661889	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs75518445	chr10:42661889-42661890	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs76588543	chr10:42661892-42661893	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs201648287	chr10:42661897-42661898	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs559237150	chr10:42661904-42661905	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs61728797	chr10:42661905-42661906	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs371611588	chr10:42661909-42661910	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs199802561	chr10:42661912-42661913	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs534835874	chr10:42661914-42661915	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs555031197	chr10:42661915-42661916	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs201700946	chr10:42661926-42661927	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs200732581	chr10:42661930-42661931	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs111209062	chr10:42661931-42661932	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs199849777	chr10:42661935-42661936	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs368333578	chr10:42661941-42661942	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs201164968	chr10:42661954-42661955	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs375301363	chr10:42661964-42661965	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs62649153	chr10:42661976-42661977	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs62649154	chr10:42661980-42661981	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs62651086	chr10:42661986-42661987	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs150923644	chr10:42661998-42661999	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs61727546	chr10:42662003-42662004	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs545680759	chr10:42662007-42662008	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs201185947	chr10:42662008-42662009	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs201971203	chr10:42662013-42662014	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs559167232	chr10:42662026-42662027	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs528265585	chr10:42662028-42662029	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs547998454	chr10:42662029-42662030	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs367660789	chr10:42662038-42662039	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs143033829	chr10:42662044-42662045	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs561797744	chr10:42662046-42662047	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs367800282	chr10:42662051-42662052	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs147392685	chr10:42662052-42662053	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs142058121	chr10:42662055-42662056	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs372116379	chr10:42662057-42662058	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs200188670	chr10:42662062-42662063	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs201060184	chr10:42662073-42662074	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Esophageal cancer	21851588	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21509527	CNVD
Autism	18414403	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Mental retardation	21062444	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Testicular germ cell tumor	18059402	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Obesity	20622171	CNVD
Breast cancer	21364760	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	22241247	CNVD
Intellectual disability	21811512	CNVD
Papillary thyroid carcinoma	21436994	CNVD
Hirschsprung''s Disease	21712996	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Obesity	21956041	CNVD
Lung cancer	21569311	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Renal cell carcinoma	18765545	CNVD
Breast cancer	21785460	CNVD
Autism	20531469	CNVD
small cell lung cancer	20016488	CNVD

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:42655800-42668200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
2	chr10:42660000-42668200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
3	chr10:42660400-42668000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:42660400-42668000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
5	chr10:42660600-42668000	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:42661000-42667600	ZNF genes & repeats	Primary T cells from cord blood	blood
7	chr10:42661200-42662000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
8	chr10:42661200-42662000	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
9	chr10:42661200-42662000	ZNF genes & repeats	Gastric	stomach
10	chr10:42661200-42662000	ZNF genes & repeats	Dnd41	blood
11	chr10:42661200-42662200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
12	chr10:42661200-42662600	ZNF genes & repeats	Brain Hippocampus Middle	brain
13	chr10:42661200-42663000	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr10:42661200-42663200	ZNF genes & repeats	Brain Anterior Caudate	brain
15	chr10:42661200-42663200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
16	chr10:42661200-42664400	ZNF genes & repeats	Brain Angular Gyrus	brain
17	chr10:42661200-42667000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
18	chr10:42661200-42667200	ZNF genes & repeats	Brain Substantia Nigra	brain
19	chr10:42661200-42667400	ZNF genes & repeats	K562	blood
20	chr10:42661200-42667600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
21	chr10:42661200-42667600	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr10:42661200-42667600	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
23	chr10:42661200-42667600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
24	chr10:42661200-42667600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
25	chr10:42661200-42667600	ZNF genes & repeats	Fetal Brain Male	brain
26	chr10:42661200-42667600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
27	chr10:42661200-42667800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
28	chr10:42661200-42667800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr10:42661200-42667800	ZNF genes & repeats	Adipose Nuclei	Adipose
30	chr10:42661200-42667800	ZNF genes & repeats	Fetal Heart	heart
31	chr10:42661200-42667800	ZNF genes & repeats	Fetal Lung	lung
32	chr10:42661200-42668000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
33	chr10:42661200-42668200	ZNF genes & repeats	Liver	Liver
34	chr10:42661400-42667200	ZNF genes & repeats	Primary B cells from cord blood	blood
35	chr10:42661400-42667200	ZNF genes & repeats	GM12878-XiMat	blood
36	chr10:42661400-42667400	ZNF genes & repeats	HepG2	liver
37	chr10:42661400-42667600	ZNF genes & repeats	ES-WA7 Cell Line	embryonic stem cell
38	chr10:42661400-42667600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
39	chr10:42661400-42667600	ZNF genes & repeats	Fetal Kidney	kidney
40	chr10:42661400-42667600	ZNF genes & repeats	HUVEC	blood vessel
41	chr10:42661400-42667800	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
42	chr10:42661600-42666800	Weak transcription	NHDF-Ad	bronchial
43	chr10:42661800-42662800	Weak transcription	NHEK	skin
44	chr10:42662800-42663000	ZNF genes & repeats	NHEK	skin
45	chr10:42663600-42664200	ZNF genes & repeats	NH-A	brain
46	chr10:42666000-42667600	ZNF genes & repeats	Gastric	stomach
47	chr10:42666800-42667400	ZNF genes & repeats	NH-A	brain
48	chr10:42666800-42667600	ZNF genes & repeats	NHDF-Ad	bronchial

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