Variant report
| Variant | esv1348802 |
|---|---|
| Chromosome Location | chr10:20058424-20058514 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs71388865 | chr10:20058424-20058425 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs572444795 | chr10:20058428-20058429 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs61841489 | chr10:20058456-20058457 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs61841490 | chr10:20058460-20058461 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
| 5 | rs190506306 | chr10:20058474-20058475 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs549183282 | chr10:20058475-20058476 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs183046952 | chr10:20058480-20058481 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs61841491 | chr10:20058490-20058491 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs561219514 | chr10:20058499-20058500 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs375686769 | chr10:20058500-20058501 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs138387578 | chr10:20058504-20058505 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs571548251 | chr10:20058507-20058508 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs532540266 | chr10:20058510-20058511 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs577643200 | chr10:20058514-20058515 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:41)
| Disease | PMID | Source |
|---|---|---|
| Medulloblastoma | 16783165 | CNVD |
| Breast cancer | 17133270 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Phyllodes tumor | 17334353 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Chordoma | 21602918 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Melanoma | 18172304 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Acute lymphoblastic leukemia | 20724749 | CNVD |
| Autism | 22495311 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Intracranial aneurysm | 16715129 | CNVD |
| Multiple myeloma | 16616336 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Epilepsy | 22083797 | CNVD |
| Olfactory neuroblastoma | 18408657 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
| Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Cancer | 20164919 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:20046200-20080800 | Weak transcription | Fetal Intestine Small | intestine |
| 2 | chr10:20057400-20063400 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
