Variant report

Variant	esv13851
Chromosome Location	chr5:106089288-106090342
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 79 )

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs543695494	chr5:106089600-106089601	Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs1561351	chr5:106089624-106089625	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
3	rs573282613	chr5:106089656-106089657	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs1561352	chr5:106089702-106089703	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs58666229	chr5:106089729-106089730	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs1561353	chr5:106089786-106089787	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs1561354	chr5:106089895-106089896	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
8	rs556482742	chr5:106089918-106089919	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs112955914	chr5:106090001-106090002	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs530867260	chr5:106090061-106090062	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs190965542	chr5:106090080-106090081	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs183534560	chr5:106090119-106090120	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs571326851	chr5:106090123-106090124	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs111649997	chr5:106090147-106090148	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs144081502	chr5:106090161-106090162	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs74973325	chr5:106090163-106090164	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs78376901	chr5:106090168-106090169	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs566041013	chr5:106090240-106090241	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs1370747	chr5:106090251-106090252	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs1370748	chr5:106090276-106090277	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
21	rs577803495	chr5:106090290-106090291	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs373125687	chr5:106090309-106090310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs377086752	chr5:106090321-106090322	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs2218048	chr5:106090323-106090324	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:79)

Disease	PMID	Source
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Cancer	16751803	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Breast cancer	17393978	CNVD
Cancer	21359685	CNVD
Non-small cell lung cancer	21829676	CNVD
adenomatous polyposis	22470819	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
Lung cancer	18438408	CNVD
Retinoblastoma	22278416	CNVD
Bipolar disorder	18458673	CNVD
Thyroid cancer	19087340	CNVD
Breast cancer	21785460	CNVD
Squamous cell cancer	20885788	CNVD
Hepatocellular carcinoma	16750200	CNVD
Neurodevelopmental disorder	22521361	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	17133270	CNVD
Acute myeloid leukemia	20729466	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Acute myeloid leukemia	21251322	CNVD
lymphocytic leukemia	21291569	CNVD
Colorectal cancer	16272173	CNVD
Prostate cancer	16573809	CNVD
Cancer	20164920	CNVD
Myelodysplastic syndrome	21251322	CNVD
abnormal development	18461090	CNVD
Colorectal cancer	16774939	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Multiple myeloma	17550852	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Ovarian cancer	21720365	CNVD
Neurocytoma	17123091	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	21509527	CNVD
Breast cancer	16608533	CNVD
Myelofibrosis	22110671	CNVD
Lung cancer	16773561	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:106089600-106089800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
2	chr5:106089800-106090600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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