Variant report

Variant	esv13963
Chromosome Location	chr10:26345494-26361303
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:26360967..26361482-chr2:84342825..84343332,2	MCF-7	breast:

Extended variants
information (count: 805 )
Associated
traits (count: 43 )

Variant overlapped rSNPs/rCNVs (count:805 , 50 per page) page: 1 2 3 4 5 6 7 ... 17

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs17738967	chr10:26345510-26345511	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs536103044	chr10:26345531-26345532	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs556051108	chr10:26345581-26345582	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs572659960	chr10:26345582-26345583	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs17666328	chr10:26345590-26345591	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs200071123	chr10:26345611-26345612	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs34669089	chr10:26345612-26345613	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs7917879	chr10:26345635-26345636	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs577996932	chr10:26345636-26345637	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs34311739	chr10:26345670-26345671	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs17738985	chr10:26345699-26345700	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs529006351	chr10:26345744-26345745	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs59183894	chr10:26345890-26345891	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs59180311	chr10:26345907-26345908	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs559185442	chr10:26345908-26345909	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs528399607	chr10:26345933-26345934	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs551684262	chr10:26345935-26345936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs185419023	chr10:26345967-26345968	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs571142749	chr10:26345969-26345970	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs113008252	chr10:26345997-26345998	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs536616073	chr10:26346011-26346012	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs16926544	chr10:26346012-26346013	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs35000419	chr10:26346047-26346048	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs35251452	chr10:26346086-26346087	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
25	rs34353852	chr10:26346090-26346091	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs12784526	chr10:26346152-26346153	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs566289681	chr10:26346163-26346164	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs534991210	chr10:26346168-26346169	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs558468917	chr10:26346171-26346172	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs577954437	chr10:26346175-26346176	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs12784683	chr10:26346179-26346180	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs556992921	chr10:26346230-26346231	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs142874338	chr10:26346236-26346237	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs12784717	chr10:26346254-26346255	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
35	rs559262820	chr10:26346298-26346299	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs75829309	chr10:26346314-26346315	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs12784877	chr10:26346315-26346316	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs375119325	chr10:26346320-26346321	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs368890489	chr10:26346322-26346323	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs530470635	chr10:26346378-26346379	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs550605043	chr10:26346394-26346395	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs560932386	chr10:26346421-26346422	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs12241851	chr10:26346480-26346481	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
44	rs12240279	chr10:26346541-26346542	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs566131456	chr10:26346552-26346553	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs11014937	chr10:26346598-26346599	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs78249700	chr10:26346600-26346601	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs571915314	chr10:26346613-26346614	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs537011732	chr10:26346614-26346615	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs11014938	chr10:26346645-26346646	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:43)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioblastoma multiforme	21525872	CNVD
Adrenocortical carcinoma	18281524	CNVD
Breast cancer	21364760	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26341800-26346800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr10:26344200-26355800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:26346800-26347000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
4	chr10:26351600-26352800	Enhancers	Pancreatic Islets	Pancreatic Islet
5	chr10:26352400-26353200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr10:26352800-26358400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr10:26355800-26356800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr10:26356800-26358600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr10:26358400-26358800	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr10:26358600-26362400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr10:26358800-26361000	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr10:26361000-26361600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet

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