Variant report

Variant	esv14008
Chromosome Location	chr19:24551540-24631644
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5165 )
Associated
traits (count: 39 )

Variant overlapped rSNPs/rCNVs (count:5165 , 50 per page) page: 1 2 3 4 5 6 7 ... 104

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs201215685	chr19:24551555-24551556	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs555258509	chr19:24551556-24551557	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs572705919	chr19:24551557-24551558	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs374799762	chr19:24551573-24551574	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs564971914	chr19:24551580-24551581	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs532289563	chr19:24551584-24551585	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs544406615	chr19:24551585-24551586	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs562701870	chr19:24551600-24551601	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs529922395	chr19:24551633-24551634	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs548151585	chr19:24551649-24551650	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs566769732	chr19:24551656-24551657	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs528471765	chr19:24551680-24551681	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs546629522	chr19:24551681-24551682	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs571390469	chr19:24551689-24551690	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs112394898	chr19:24551691-24551692	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs139009425	chr19:24551711-24551712	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs538774884	chr19:24551725-24551726	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs550680781	chr19:24551732-24551733	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs569316287	chr19:24551744-24551745	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs536859726	chr19:24551745-24551746	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs554914875	chr19:24551746-24551747	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs573530471	chr19:24551768-24551769	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs1120553	chr19:24551790-24551791	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs372888469	chr19:24551800-24551801	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs8187246	chr19:24551814-24551815	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs7339586	chr19:24551815-24551816	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs544296898	chr19:24551817-24551818	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs62116002	chr19:24551818-24551819	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs386808244	chr19:24551822-24551823	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs116956130	chr19:24551823-24551824	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs201587505	chr19:24551853-24551854	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs1120552	chr19:24551876-24551877	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs74179672	chr19:24551878-24551879	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs562588102	chr19:24551881-24551882	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs574506683	chr19:24551889-24551890	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs542011261	chr19:24551906-24551907	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs1120551	chr19:24551907-24551908	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs527615780	chr19:24551915-24551916	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs377481748	chr19:24551917-24551918	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs564906922	chr19:24551925-24551926	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs7339596	chr19:24551962-24551963	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs532382993	chr19:24551985-24551986	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs550618055	chr19:24551987-24551988	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs569335337	chr19:24552035-24552036	ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs536440842	chr19:24552039-24552040	ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs548806019	chr19:24552055-24552056	ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs567039259	chr19:24552071-24552072	ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs1902454	chr19:24552075-24552076	ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs559314688	chr19:24552146-24552147	ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs374758037	chr19:24552151-24552152	ZNF genes & repeats Active TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:39)

Disease	PMID	Source
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Ductal carcinoma	22052326	CNVD
Cancer	20164920	CNVD
small cell lung cancer	20016488	CNVD
Renal cell carcinoma	18194544	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Autism	19287141	CNVD
Lung cancer	18438408	CNVD

Chromatin state (count:104 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:24507800-24577200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr19:24508000-24573400	ZNF genes & repeats	Liver	Liver
3	chr19:24508800-24569000	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr19:24509200-24570800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
5	chr19:24513000-24571800	ZNF genes & repeats	Adipose Nuclei	Adipose
6	chr19:24522000-24576600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
7	chr19:24525400-24577200	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
8	chr19:24533400-24556800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
9	chr19:24548400-24559800	ZNF genes & repeats	Psoas Muscle	Psoas
10	chr19:24548600-24552000	Weak transcription	Aorta	Aorta
11	chr19:24551200-24553200	Weak transcription	Right Atrium	heart
12	chr19:24551400-24556600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
13	chr19:24551600-24552000	ZNF genes & repeats	Brain Substantia Nigra	brain
14	chr19:24552000-24553200	Active TSS	Aorta	Aorta
15	chr19:24553000-24553600	ZNF genes & repeats	Fetal Heart	heart
16	chr19:24553200-24553600	Active TSS	Right Atrium	heart
17	chr19:24553600-24554600	Active TSS	Fetal Heart	heart
18	chr19:24554800-24555200	ZNF genes & repeats	Dnd41	blood
19	chr19:24555400-24555600	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
20	chr19:24555600-24563600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
21	chr19:24556000-24556600	Active TSS	Right Atrium	heart
22	chr19:24556600-24558200	Weak transcription	Right Atrium	heart
23	chr19:24556600-24565400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr19:24557000-24558200	Active TSS	Fetal Heart	heart
25	chr19:24558000-24560600	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
26	chr19:24558200-24558600	Active TSS	Right Atrium	heart
27	chr19:24558200-24559400	ZNF genes & repeats	Fetal Heart	heart
28	chr19:24558600-24565600	ZNF genes & repeats	Primary T cells from cord blood	blood
29	chr19:24559400-24560000	Active TSS	Fetal Heart	heart
30	chr19:24560600-24565000	ZNF genes & repeats	Dnd41	blood
31	chr19:24562000-24562800	ZNF genes & repeats	Fetal Brain Male	brain
32	chr19:24563000-24568800	ZNF genes & repeats	Psoas Muscle	Psoas
33	chr19:24563000-24569000	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
34	chr19:24563600-24564000	Active TSS	Right Atrium	heart
35	chr19:24564000-24565800	Weak transcription	Right Atrium	heart
36	chr19:24565200-24568200	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
37	chr19:24565600-24565800	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
38	chr19:24565600-24566600	ZNF genes & repeats	Duodenum Mucosa	Duodenum
39	chr19:24565800-24566800	Active TSS	Right Atrium	heart
40	chr19:24572400-24573400	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
41	chr19:24572600-24573200	Active TSS	Aorta	Aorta
42	chr19:24573000-24573400	ZNF genes & repeats	Adipose Nuclei	Adipose
43	chr19:24573200-24574600	Weak transcription	Aorta	Aorta
44	chr19:24574400-24576200	ZNF genes & repeats	Dnd41	blood
45	chr19:24574600-24575800	Active TSS	Aorta	Aorta
46	chr19:24577400-24577600	ZNF genes & repeats	Aorta	Aorta
47	chr19:24577600-24578000	Weak transcription	Aorta	Aorta
48	chr19:24582600-24583200	Active TSS	Aorta	Aorta
49	chr19:24582800-24588600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
50	chr19:24583000-24588600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell

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