Variant report

Variant	esv1472850
Chromosome Location	chr10:823543-823739
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:823329..824026-chr16:78285555..78286055,2	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs71376867	chr10:823544-823545	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs12762855	chr10:823563-823564	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs578181577	chr10:823578-823579	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs543692165	chr10:823579-823580	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs111823089	chr10:823589-823590	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs12767883	chr10:823593-823594	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs112017160	chr10:823638-823639	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs12763037	chr10:823647-823648	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs111857413	chr10:823662-823663	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs529428700	chr10:823665-823666	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs113647446	chr10:823669-823670	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs56189180	chr10:823718-823719	Enhancers Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Cancer	20164920	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	20409316	CNVD
Gastric adenocarcinoma	19115996	CNVD
Pilocytic astrocytoma	18622384	CNVD
Pilomyxoid astrocytoma	18622384	CNVD
Breast cancer	17133270	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Cancer	21129771	CNVD
Sudden cardiac death	19188705	CNVD
Digeorge syndrome	22283845	CNVD
Colorectal cancer	20709793	CNVD
Wilms tumour	19047088	CNVD
Hepatocellular carcinoma	16750200	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21183584	CNVD
Barakat syndrome	22470819	CNVD
Melanoma	18172304	CNVD
Ovarian cancer	21720365	CNVD
Autism	18414403	CNVD
Malignant melanoma	18718029	CNVD
Breast cancer	22032731	CNVD
Medulloblastoma	16783165	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Melanoma	17363583	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21785460	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Glioblastoma multiforme	21525872	CNVD
Breast cancer	21858162	CNVD
Obesity	19966786	CNVD
Aortic dissecting aneurysms	22263138	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:818400-830600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:821400-824000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:821800-823800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr10:821800-824600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr10:822000-825000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr10:822000-825000	Weak transcription	NH-A	brain
7	chr10:822000-825400	Weak transcription	Osteobl	bone
8	chr10:822000-830400	Weak transcription	Esophagus	oesophagus
9	chr10:822800-825400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr10:823200-824400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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