Variant report

Variant	esv1476869
Chromosome Location	chr15:76862887-76862893
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 51 )

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs397842262	chr15:76862888-76862889	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs11279231	chr15:76862889-76862890	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs201094746	chr15:76862893-76862894	ZNF genes & repeats Strong transcription Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:51)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Wilms tumour	21544195	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Cancer	16751803	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	17133270	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	17322880	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Lung cancer	18438408	CNVD
Myelofibrosis	22110671	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Papillary thyroid carcinoma	22161024	CNVD
Autism	21480499	CNVD
Breast cancer	17603634	CNVD
Acute myeloid leukemia	16864856	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Breast cancer	21364760	CNVD

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:76846000-76869000	Weak transcription	Left Ventricle	heart
2	chr15:76846000-76869000	Weak transcription	Pancreas	Pancrea
3	chr15:76846200-76868800	Weak transcription	Fetal Intestine Small	intestine
4	chr15:76847000-76868200	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr15:76848200-76863000	Weak transcription	Primary T cells from cord blood	blood
6	chr15:76850200-76868400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr15:76852000-76867000	Weak transcription	Primary B cells from peripheral blood	blood
8	chr15:76856400-76863800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr15:76857000-76868800	Weak transcription	Liver	Liver
10	chr15:76858600-76863000	Weak transcription	Fetal Brain Male	brain
11	chr15:76858600-76869000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr15:76860000-76868400	Weak transcription	Esophagus	oesophagus
13	chr15:76861000-76866400	Weak transcription	Duodenum Mucosa	Duodenum
14	chr15:76861400-76866000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr15:76861600-76869200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr15:76861800-76863400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr15:76861800-76869000	Weak transcription	Colonic Mucosa	Colon
18	chr15:76861800-76869000	Weak transcription	Placenta	Placenta
19	chr15:76862400-76863000	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
20	chr15:76862400-76863200	Strong transcription	Monocytes-CD14+_RO01746	blood
21	chr15:76862400-76864800	Weak transcription	Ovary	ovary
22	chr15:76862600-76864000	Strong transcription	Primary B cells from cord blood	blood
23	chr15:76862600-76868800	Weak transcription	Adipose Nuclei	Adipose
24	chr15:76862600-76869000	Weak transcription	Right Ventricle	heart
25	chr15:76862600-76872000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
26	chr15:76862800-76863600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
27	chr15:76862800-76863600	Strong transcription	Dnd41	blood
28	chr15:76862800-76865400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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