Variant report

Variant	esv15075
Chromosome Location	chr8:11896344-12034962
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BATF	chr8:11921281-11921530	GM12878	blood:	n/a	n/a
2	BATF	chr8:11965355-11965780	GM12878	blood:	n/a	n/a
3	BATF	chr8:11973137-11973394	GM12878	blood:	n/a	n/a
4	BATF	chr8:11921283-11921507	GM12878	blood:	n/a	n/a
5	BATF	chr8:11970194-11970485	GM12878	blood:	n/a	chr8:11970334-11970345
6	BATF	chr8:11970251-11970426	GM12878	blood:	n/a	chr8:11970334-11970345
7	BCL11A	chr8:11958839-11959052	GM12878	blood:	n/a	n/a
8	BCL11A	chr8:11965306-11965766	GM12878	blood:	n/a	n/a
9	BCL11A	chr8:11965424-11965597	GM12878	blood:	n/a	n/a
10	BCL3	chr8:11998133-11998417	GM12878	blood:	n/a	n/a
11	CEBPB	chr8:12006770-12006998	K562	blood:	n/a	n/a
12	CEBPB	chr8:11909083-11909117	A549	lung:	n/a	chr8:11909099-11909108 chr8:11909099-11909108 chr8:11909097-11909110 chr8:11909097-11909110 chr8:11909099-11909108
13	CEBPB	chr8:11908914-11909287	Hela-S3	cervix:	n/a	chr8:11909099-11909108 chr8:11909099-11909108 chr8:11909097-11909110 chr8:11909097-11909110 chr8:11909099-11909108
14	CTCF	chr8:11927116-11927258	Lung_OC	lung:	n/a	n/a
15	CTCF	chr8:11970362-11970429	Kidney_OC	kidney:	n/a	n/a
16	CTCF	chr8:11973181-11973284	SK-N-SH_RA	brain:	n/a	chr8:11973230-11973248 chr8:11973225-11973246 chr8:11973244-11973260 chr8:11973245-11973266 chr8:11973243-11973261
17	CTCF	chr8:11973120-11973270	AG10803	skin:	n/a	chr8:11973230-11973248 chr8:11973225-11973246 chr8:11973244-11973260 chr8:11973245-11973266 chr8:11973243-11973261
18	CTCF	chr8:11967392-11967420	Spleen_OC	spleen:	n/a	n/a
19	CTCF	chr8:11933196-11933217	GM10248	blood:	n/a	n/a
20	CTCF	chr8:11973112-11973392	LNCaP	prostate:	n/a	chr8:11973230-11973248 chr8:11973225-11973246 chr8:11973244-11973260 chr8:11973245-11973266 chr8:11973243-11973261
21	CTCF	chr8:11921276-11921427	GM19240	blood:	n/a	n/a
22	CTCF	chr8:11973237-11973278	MCF-7	breast:	n/a	chr8:11973244-11973260 chr8:11973245-11973266 chr8:11973243-11973261
23	CTCF	chr8:11921407-11921552	Kidney_OC	kidney:	n/a	n/a
24	CTCF	chr8:12009935-12009957	GM20000	blood:	n/a	n/a
25	CTCF	chr8:11918078-11918100	A549	lung:	n/a	n/a
26	CTCF	chr8:11973152-11973315	H1-hESC	embryonic stem cell:	n/a	chr8:11973230-11973248 chr8:11973225-11973246 chr8:11973244-11973260 chr8:11973245-11973266 chr8:11973243-11973261
27	CTCF	chr8:11973146-11973359	A549	lung:	n/a	chr8:11973230-11973248 chr8:11973225-11973246 chr8:11973244-11973260 chr8:11973245-11973266 chr8:11973243-11973261
28	CTCF	chr8:11973400-11973550	NHLF	lung:	n/a	n/a
29	CTCF	chr8:11973124-11973359	GM10266	blood:	n/a	chr8:11973230-11973248 chr8:11973225-11973246 chr8:11973244-11973260 chr8:11973245-11973266 chr8:11973243-11973261
30	CTCF	chr8:12024046-12024090	K562	blood:	n/a	chr8:12024055-12024076 chr8:12024053-12024071
31	CTCF	chr8:12004460-12004610	GM12878	blood:	n/a	chr8:12004569-12004577 chr8:12004568-12004576
32	CTCF	chr8:11973125-11973374	LNCaP	prostate:	n/a	chr8:11973230-11973248 chr8:11973225-11973246 chr8:11973244-11973260 chr8:11973245-11973266 chr8:11973243-11973261
33	CTCF	chr8:11973120-11973270	HA-sp	spinal cord:	n/a	chr8:11973230-11973248 chr8:11973225-11973246 chr8:11973244-11973260 chr8:11973245-11973266 chr8:11973243-11973261
34	CTCF	chr8:11921279-11921463	GM19239	blood:	n/a	n/a
35	CTCF	chr8:11973024-11973465	A549	lung:	n/a	chr8:11973230-11973248 chr8:11973225-11973246 chr8:11973244-11973260 chr8:11973245-11973266 chr8:11973243-11973261
36	CTCF	chr8:11973120-11973270	HCFaa	heart:	n/a	chr8:11973230-11973248 chr8:11973225-11973246 chr8:11973244-11973260 chr8:11973245-11973266 chr8:11973243-11973261
37	CTCF	chr8:11973180-11973330	GM12878	blood:	n/a	chr8:11973230-11973248 chr8:11973225-11973246 chr8:11973244-11973260 chr8:11973245-11973266 chr8:11973243-11973261
38	CTCF	chr8:11921304-11921424	NHEK	skin:	n/a	n/a
39	CTCF	chr8:11973100-11973250	K562	blood:	n/a	chr8:11973230-11973248 chr8:11973225-11973246
40	CTCF	chr8:11973140-11973290	HA-sp	spinal cord:	n/a	chr8:11973230-11973248 chr8:11973225-11973246 chr8:11973244-11973260 chr8:11973245-11973266 chr8:11973243-11973261
41	CTCF	chr8:11918021-11918104	Hela-S3	cervix:	n/a	n/a
42	CTCF	chr8:12023980-12024135	Gliobla	brain:	n/a	chr8:12024055-12024076 chr8:12024053-12024071
43	CTCF	chr8:11921266-11921435	GM12878	blood:	n/a	n/a
44	CTCF	chr8:11918048-11918058	Medullo	brain:	n/a	n/a
45	CTCF	chr8:12023987-12024136	MCF-7	breast:	n/a	chr8:12024055-12024076 chr8:12024053-12024071
46	CTCF	chr8:11979160-11979522	A549	lung:	n/a	chr8:11979308-11979329 chr8:11979256-11979277
47	CTCF	chr8:12004420-12004570	HPF	lung:	n/a	n/a
48	CTCF	chr8:11921237-11921475	MCF-7	breast:	n/a	n/a
49	CTCF	chr8:11921147-11921571	K562	blood:	n/a	n/a
50	CTCF	chr8:11973220-11973240	GM20000	blood:	n/a	n/a

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr8:11993787-11993837	SKMC	muscle:	n/a
2	chr8:11947722-11947772	T-47D	breast:	n/a
3	chr8:11986933-11986983	Hepatocyte	liver:	n/a
4	chr8:11973495-11973545	U87	brain:	n/a
5	chr8:11986813-11986863	HMEC	breast:	n/a
6	chr8:11993787-11993837	SKMC	muscle:	n/a
7	chr8:11947722-11947772	T-47D	breast:	n/a
8	chr8:11986933-11986983	Hepatocyte	liver:	n/a
9	chr8:11973495-11973545	U87	brain:	n/a
10	chr8:11986813-11986863	HMEC	breast:	n/a
11	chr8:11995002-11995052	HEEpiC	esophagus:	n/a
12	chr8:12033377-12033427	GM12892	blood:	n/a
13	chr8:11991521-11991571	HIPEpiC	eye:	n/a
14	chr8:11993449-11993499	HPAEpiC	pulmonary alveolar:	n/a
15	chr8:12030155-12030205	HepG2	liver:	n/a
16	chr8:11986501-11986551	Caco-2	colon:	n/a
17	chr8:11997496-11997546	CMK	blood:	n/a
18	chr8:11994639-11994689	AoSMC	blood vessel:	n/a
19	chr8:11989691-11989741	Hepatocyte	liver:	n/a
20	chr8:12027122-12027172	ProgFib	skin:	n/a
21	chr8:11986876-11986926	MCF10A-Er-Src	breast:	n/a
22	chr8:11977206-11977256	AG04449	skin:	fetal
23	chr8:11986813-11986863	Caco-2	colon:	n/a
24	chr8:11986501-11986551	T-47D	breast:	n/a
25	chr8:11993787-11993837	RPTEC	kidney:	n/a
26	chr8:11996358-11996408	HCM	heart:	n/a
27	chr8:11907551-11907601	AoSMC	blood vessel:	n/a
28	chr8:11994639-11994689	U87	brain:	n/a
29	chr8:11996937-11996987	HEK293	kidney:	embryo
30	chr8:11986876-11986926	HUVEC	blood vessel:	n/a
31	chr8:12027122-12027172	HRCEpiC	kidney:	n/a
32	chr8:11977206-11977256	Jurkat	blood:	n/a
33	chr8:11996358-11996408	HRPEpiC	eye:	n/a
34	chr8:11989691-11989741	ECC-1	luminal epithelium:	n/a
35	chr8:11986864-11986914	Hela-S3	cervix:	n/a
36	chr8:11986933-11986983	HPAEpiC	pulmonary alveolar:	n/a
37	chr8:12030155-12030205	SK-N-SH	brain:	n/a
38	chr8:12030155-12030205	T-47D	breast:	n/a
39	chr8:12030155-12030205	HCT-116	colon:	n/a
40	chr8:12034388-12034438	Hepatocyte	liver:	n/a
41	chr8:11995002-11995052	BE2_C	brain:	n/a
42	chr8:11996937-11996987	SAEC	small airway:	n/a
43	chr8:11996937-11996987	AG09309	skin:	n/a
44	chr8:11986501-11986551	NHBE	bronchial:	n/a
45	chr8:11972998-11973048	AoSMC	blood vessel:	n/a
46	chr8:11986501-11986551	CMK	blood:	n/a
47	chr8:11977206-11977256	U87	brain:	n/a
48	chr8:11986813-11986863	PANC-1	pancreas:	n/a
49	chr8:12034317-12034367	CMK	blood:	n/a
50	chr8:11947722-11947772	PANC-1	pancreas:	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:101006536..101007134-chr8:11906757..11907257,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF705D-2	chr8:11998190-11998224	NONHSAT125119
2	lnc-ZNF705D-2	chr8:12002932-12003176	NONHSAT125119
3	lnc-USP17L2-2	chr8:12008404-12008643	NONHSAT125120
4	lnc-ZNF705D-2	chr8:12034324-12034474	NONHSAT125117
5	lnc-ZNF705D-2	chr8:12003148-12003209	NONHSAT125117
6	lnc-ZNF705D-2	chr8:11973699-11973834	NONHSAT125117
7	lnc-ZNF705D-2	chr8:11979496-11979559	NONHSAT125117
8	lnc-ZNF705D-2	chr8:12002932-12003055	NONHSAT125117
9	lnc-USP17L2-1	chr8:11985367-11986806	NONHSAT125118
10	lnc-ZNF705D-2	chr8:12034891-12035004	NONHSAT125117

Variant related genes	Relation type
DEFB109P3	TF binding region
DEFB108P3	TF binding region
RNA5SP253	TF binding region
USP17L7	TF binding region
ALG1L11P	TF binding region
USP17L2	TF binding region
FAM66D	TF binding region
ZNF705D	TF binding region
ENSG00000254923	TF binding region
ENSG00000233050	TF binding region
OR7E160P	TF binding region
ENSG00000254700	TF binding region
ENSG00000266637	TF binding region
DEFB109P3	CpG island
DEFB108P3	CpG island
RNA5SP253	CpG island
USP17L7	CpG island
ALG1L11P	CpG island
USP17L2	CpG island
FAM66D	CpG island
ZNF705D	CpG island
ENSG00000254923	CpG island
ENSG00000233050	CpG island
OR7E160P	CpG island
ENSG00000254700	CpG island
ENSG00000266637	CpG island

Extended variants
information (count: 2536 )
Associated
traits (count: 145 )

Variant overlapped rSNPs/rCNVs (count:2536 , 50 per page) page: 1 2 3 4 5 6 7 ... 51

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs75980827	chr8:11896890-11896891	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs547759527	chr8:11896895-11896896	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs577195129	chr8:11896919-11896920	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs566391958	chr8:11896925-11896926	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
5	rs181336295	chr8:11905944-11905945	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
6	rs541038699	chr8:11929315-11929316	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
7	rs559378140	chr8:11929329-11929330	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
8	rs530157903	chr8:11929392-11929393	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
9	rs113414594	chr8:11929422-11929423	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
10	rs548873571	chr8:11929429-11929430	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
11	rs541895700	chr8:11933404-11933405	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
12	rs147702318	chr8:11933457-11933458	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
13	rs374548704	chr8:11933458-11933459	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
14	rs573009196	chr8:11946159-11946160	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
15	rs150396976	chr8:11946211-11946212	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
16	rs535788747	chr8:11946299-11946300	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
17	rs541200476	chr8:11947129-11947130	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
18	rs552910910	chr8:11947160-11947161	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
19	rs574612375	chr8:11947275-11947276	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
20	rs554366001	chr8:11947324-11947325	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
21	rs28851833	chr8:11947331-11947332	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
22	rs375478232	chr8:11947360-11947361	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
23	rs186290026	chr8:11947361-11947362	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
24	rs113638801	chr8:11947380-11947381	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
25	rs113940228	chr8:11947385-11947386	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
26	rs111282037	chr8:11947395-11947396	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
27	rs148048750	chr8:11947399-11947400	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
28	rs184060172	chr8:11947421-11947422	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
29	rs201488691	chr8:11970195-11970196	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
30	rs368656492	chr8:11970655-11970656	Inactive region	CpG island	1 gene(s)	Overlapped CNVs	n/a
31	rs199638308	chr8:11970688-11970689	Inactive region	CpG island	1 gene(s)	Overlapped CNVs	n/a
32	rs201513319	chr8:11972999-11973000	Inactive region	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a
33	rs113071926	chr8:11973071-11973072	Inactive region	TF binding region CpG island	1 gene(s)	Overlapped CNVs	n/a
34	rs572584977	chr8:11973213-11973214	Active TSS	TF binding region	1 gene(s)	Overlapped CNVs	n/a
35	rs370883399	chr8:11973434-11973435	Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs561471039	chr8:11973453-11973454	Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs531721238	chr8:11973484-11973485	Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs543420056	chr8:11973523-11973524	Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs373600396	chr8:11973535-11973536	Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs565010354	chr8:11973536-11973537	Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs532485932	chr8:11973548-11973549	Active TSS Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs547521095	chr8:11973618-11973619	Active TSS Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs188394489	chr8:11973621-11973622	Active TSS Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs527542424	chr8:11973671-11973672	Active TSS Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs549251999	chr8:11973672-11973673	Active TSS Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs567460543	chr8:11973679-11973680	Active TSS Enhancers Flanking Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs376560073	chr8:11973746-11973747	Active TSS Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
48	rs537797263	chr8:11973798-11973799	Active TSS Enhancers Flanking Active TSS	lncRNA	n/a	Overlapped CNVs	n/a
49	rs556214719	chr8:11973849-11973850	Active TSS Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a
50	rs571327667	chr8:11973874-11973875	Active TSS Flanking Active TSS Enhancers	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:145)

Disease	PMID	Source
Crohn''s disease	19220326	CNVD
Psoriasis	19220326	CNVD
Prostate cancer	21965145	CNVD
Prostate cancer	18515986	CNVD
Chronic obstructive pulmonary disease	20378733	CNVD
Autism	18414403	CNVD
Cancer	21183584	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Breast cancer	17603634	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Ovarian cancer	20844748	CNVD
Cervical cancer	17311676	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Schizophrenia	20877625	CNVD
Disorders of sex development	21048976	CNVD
Colorectal cancer	16272173	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Breast cancer	17001317	CNVD
Thyroid cancer	19087340	CNVD
Multiple myeloma	16616336	CNVD
Hepatocellular carcinoma	22174799	CNVD
Heart disease	21282601	CNVD
Prostate cancer	16573809	CNVD
T-cell lymphomas	19863542	CNVD
Ovarian cancer	22174824	CNVD
Colorectal cancer	21297112	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Salivary gland tumor	18059337	CNVD
Breast cancer	17133270	CNVD
Melanoma	18172304	CNVD
Medulloblastoma	21979893	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Breast cancer	17393978	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Breast cancer	20837533	CNVD
Squamous cell cancer	21044232	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Cancer	22429812	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Colorectal cancer	20709793	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Basal cell lymphoma	21115979	CNVD
Breast cancer	21264507	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Oral cancer	21386901	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	20940404	CNVD
Colorectal cancer	19359472	CNVD
Embryonal rhabdomyosarcoma	16790082	CNVD
Gastric cancer	17167181	CNVD
Prostate cancer	16705090	CNVD
8p-syndrome	17576883	CNVD
Human rectal carcinomas	16397240	CNVD
Medulloblastoma	16968546	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Prostate cancer	17245344	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Cancer	16751803	CNVD
Wilms tumour	21544195	CNVD
Gastric cancer	17908304	CNVD
Autism	19415332	CNVD
Malaria	21533027	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD
Esophageal cancer	21851588	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Breast cancer	21245420	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Breast cancer	21785460	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Acute myeloid leukemia	20729466	CNVD
Breast cancer	21509527	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Prostate cancer	18632612	CNVD
Breast cancer	21858162	CNVD
lymphocytic leukemia	21291569	CNVD
Liver carcinoma	19366792	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Congenital diaphragmatic hernia	21064195	CNVD
Autism	22495311	CNVD
Myelofibrosis	22110671	CNVD
Intellectual disability	22045946	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	16608533	CNVD
Seminomas	18059402	CNVD
Lung cancer	18438408	CNVD
Lung squamous cell carcinoma	22363434	CNVD
Medulloblastoma	16783165	CNVD
Gastric cancer	18160780	CNVD
Breast cancer	21990379	CNVD
Psoriasis	20403174	CNVD
Psoriasis	20663923	CNVD
Crohn''s disease	16909382	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Crohn''s disease	20877625	CNVD
Inflammatory disorder	20877625	CNVD
Cardiac defect	21933911	CNVD
Psoriasis	18059266	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Psoriasis	20877625	CNVD
Mental retardation	17847001	CNVD
Prostate cancer	17217626	CNVD
Schizophrenia	21399695	CNVD
Colorectal cancer	21128281	CNVD
Colorectal cancer	19455253	CNVD
Psoriasis	18848619	CNVD
Squamous cell cancer	19047905	CNVD
Colorectal cancer	17229543	CNVD
Gastrointestinal stromal cancer	19259404	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Myxofibrosarcoma	16751306	CNVD
Immune disease	21572526	CNVD
Non-small cell lung cancer	21829676	CNVD
Ovarian neoplasms	16753589	CNVD
Kallmann Syndrome 2	22470819	CNVD
Developmental disorder	20461109	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Glioblastoma multiforme	21138945	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	21364760	CNVD
Gastric cancer	21811585	CNVD
Colorectal cancer	16774939	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Cancer	20164919	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
early-passage human iPS cells	21368824	CNVD
Schizophrenia	20967226	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Melanoma	20688739	CNVD

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:11973200-11973400	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr8:11973200-11973600	Active TSS	HUES48 Cell Line	embryonic stem cell
3	chr8:11973200-11973600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr8:11973200-11973600	Active TSS	Cortex derived primary cultured neurospheres	brain
5	chr8:11973200-11973600	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr8:11973200-11973600	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
7	chr8:11973200-11973600	Active TSS	Colonic Mucosa	Colon
8	chr8:11973200-11973600	Active TSS	Duodenum Smooth Muscle	Duodenum
9	chr8:11973200-11973600	Active TSS	Esophagus	oesophagus
10	chr8:11973200-11973600	Active TSS	Placenta	Placenta
11	chr8:11973200-11973600	Active TSS	Fetal Stomach	stomach
12	chr8:11973200-11973600	Active TSS	Fetal Thymus	thymus
13	chr8:11973200-11973600	Active TSS	Left Ventricle	heart
14	chr8:11973200-11973600	Active TSS	Thymus	Thymus
15	chr8:11973200-11973600	Active TSS	A549	lung
16	chr8:11973200-11973600	Active TSS	Monocytes-CD14+_RO01746	blood
17	chr8:11973200-11973600	Active TSS	NHLF	lung
18	chr8:11973200-11973600	Active TSS	Osteobl	bone
19	chr8:11973200-11973800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr8:11973200-11973800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr8:11973200-11973800	Active TSS	Ovary	ovary
22	chr8:11973200-11973800	Active TSS	Psoas Muscle	Psoas
23	chr8:11973200-11973800	Active TSS	Right Ventricle	heart
24	chr8:11973200-11974000	Active TSS	H1 Cell Line	embryonic stem cell
25	chr8:11973200-11974000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr8:11973200-11974000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr8:11973200-11974000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr8:11973200-11974000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr8:11973200-11974000	Active TSS	Primary T regulatory cells fromperipheralblood	blood
30	chr8:11973200-11974000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr8:11973200-11974000	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr8:11973200-11974000	Active TSS	Muscle Satellite Cultured Cells	--
33	chr8:11973200-11974000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr8:11973200-11974000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr8:11973200-11974000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr8:11973200-11974000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr8:11973200-11974000	Active TSS	Adipose Nuclei	Adipose
38	chr8:11973200-11974000	Active TSS	Brain Germinal Matrix	brain
39	chr8:11973200-11974000	Active TSS	Fetal Brain Female	brain
40	chr8:11973200-11974000	Active TSS	Fetal Muscle Leg	muscle
41	chr8:11973200-11974000	Active TSS	Stomach Smooth Muscle	stomach
42	chr8:11973400-11973600	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr8:11973400-11973800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr8:11973400-11973800	Active TSS	Rectal Mucosa Donor 31	rectum
45	chr8:11973400-11974000	Active TSS	Brain Hippocampus Middle	brain
46	chr8:11973400-11974000	Active TSS	NHDF-Ad	bronchial
47	chr8:11973600-11973800	Flanking Active TSS	Colonic Mucosa	Colon
48	chr8:11973600-11974000	Enhancers	Brain Angular Gyrus	brain
49	chr8:11973800-11974000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr8:11974000-11974400	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links