The 2.0 version of rSNPBase

Variant report

Variant esv1510602
Chromosome Location chr5:52968444-52968445
allele n/a
Outlinks Ensembl   UCSC
Chromatin state (count:80 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:52920800-52978800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
2 chr5:52929000-52981800 Weak transcription Primary T helper naive cells from peripheral blood blood
3 chr5:52935200-52978000 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
4 chr5:52938200-52970200 Weak transcription NH-A brain
5 chr5:52938600-52971000 Weak transcription Muscle Satellite Cultured Cells --
6 chr5:52940000-52982000 Weak transcription Skeletal Muscle Male skeletal muscle
7 chr5:52941400-52980200 Weak transcription HepG2 liver
8 chr5:52941400-52985200 Weak transcription Rectal Smooth Muscle rectum
9 chr5:52942400-52973400 Weak transcription Fetal Heart heart
10 chr5:52944000-52969800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
11 chr5:52945400-52974600 Weak transcription Primary T helper cells PMA-I stimulated --
12 chr5:52945400-52979000 Weak transcription HMEC breast
13 chr5:52945400-52980200 Weak transcription Primary T killer memory cells from peripheral blood blood
14 chr5:52945400-52980800 Weak transcription Rectal Mucosa Donor 31 rectum
15 chr5:52945400-52981000 Weak transcription Psoas Muscle Psoas
16 chr5:52945400-52985000 Weak transcription Brain Hippocampus Middle brain
17 chr5:52945600-52971600 Weak transcription Fetal Lung lung
18 chr5:52945600-52978400 Weak transcription Primary T killer naive cells fromperipheralblood blood
19 chr5:52945600-52980800 Weak transcription GM12878-XiMat blood
20 chr5:52945600-52981600 Weak transcription Skeletal Muscle Female skeletal muscle
21 chr5:52945600-52983000 Weak transcription Fetal Muscle Trunk muscle
22 chr5:52945600-52983600 Weak transcription Fetal Thymus thymus
23 chr5:52946800-52981400 Weak transcription NHEK skin
24 chr5:52955800-52982200 Weak transcription Dnd41 blood
25 chr5:52956000-52982600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
26 chr5:52961200-52974800 Weak transcription HSMMtube muscle
27 chr5:52961400-52970200 Weak transcription Placenta Placenta
28 chr5:52961600-52975000 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
29 chr5:52961600-52978800 Weak transcription Duodenum Smooth Muscle Duodenum
30 chr5:52961600-52984200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
31 chr5:52961800-52968800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
32 chr5:52961800-52978200 Weak transcription Left Ventricle heart
33 chr5:52961800-52978800 Weak transcription Stomach Smooth Muscle stomach
34 chr5:52961800-52979800 Weak transcription Aorta Aorta
35 chr5:52961800-52979800 Weak transcription Fetal Muscle Leg muscle
36 chr5:52961800-52989200 Weak transcription Ovary ovary
37 chr5:52962200-52978200 Weak transcription Liver Liver
38 chr5:52962400-52971600 Weak transcription Colon Smooth Muscle Colon
39 chr5:52962400-52979000 Weak transcription NHDF-Ad bronchial
40 chr5:52962400-52979800 Weak transcription Pancreas Pancrea
41 chr5:52962600-52969200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
42 chr5:52962600-52974000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
43 chr5:52962600-52975000 Weak transcription Breast Myoepithelial Primary Cells Breast
44 chr5:52962600-52975400 Weak transcription Primary hematopoietic stem cells short term culture blood
45 chr5:52962600-52978400 Weak transcription Primary hematopoietic stem cells blood
46 chr5:52962600-52980600 Weak transcription Rectal Mucosa Donor 29 rectum
47 chr5:52963000-52975600 Weak transcription Primary B cells from peripheral blood blood
48 chr5:52963000-52978600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
49 chr5:52963600-52984400 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
50 chr5:52963800-52969800 Weak transcription Fetal Intestine Large intestine

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Last update: Aug 31, 2015