Variant report

Variant	esv15204
Chromosome Location	chr20:24234682-24236680
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 77 )
Associated
traits (count: 58 )

Variant overlapped rSNPs/rCNVs (count:77 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs371697479	chr20:24234707-24234708	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs146578837	chr20:24234802-24234803	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs558434463	chr20:24234815-24234816	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs76107340	chr20:24234825-24234826	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs544078064	chr20:24234826-24234827	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs6083465	chr20:24234863-24234864	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs190813000	chr20:24234900-24234901	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs6083466	chr20:24234903-24234904	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
9	rs559699195	chr20:24234911-24234912	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs6049550	chr20:24234917-24234918	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
11	rs181716962	chr20:24234932-24234933	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs151309509	chr20:24234948-24234949	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs140539513	chr20:24234960-24234961	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs150495697	chr20:24234967-24234968	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs568010009	chr20:24235072-24235073	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs145384731	chr20:24235098-24235099	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs546238184	chr20:24235112-24235113	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs566479305	chr20:24235130-24235131	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs185839333	chr20:24235177-24235178	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs6138251	chr20:24235195-24235196	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs191447004	chr20:24235202-24235203	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs141129635	chr20:24235206-24235207	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs146923270	chr20:24235255-24235256	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs554439690	chr20:24235260-24235261	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs566067499	chr20:24235271-24235272	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs57557589	chr20:24235292-24235293	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs540143756	chr20:24235411-24235412	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs553056191	chr20:24235412-24235413	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs573209613	chr20:24235425-24235426	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs545157855	chr20:24235431-24235432	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs182773509	chr20:24235436-24235437	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs551020281	chr20:24235456-24235457	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs189329669	chr20:24235473-24235474	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs369210951	chr20:24235494-24235495	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs531127117	chr20:24235529-24235530	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs224794	chr20:24235560-24235561	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
37	rs561475678	chr20:24235606-24235607	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs187947080	chr20:24235666-24235667	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs535758977	chr20:24235679-24235680	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs571012200	chr20:24235683-24235684	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs56166503	chr20:24235703-24235704	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs190637601	chr20:24235722-24235723	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs182234527	chr20:24235761-24235762	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs6049551	chr20:24235774-24235775	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs537548433	chr20:24235853-24235854	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs554300560	chr20:24235886-24235887	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs187999165	chr20:24235889-24235890	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs114449622	chr20:24235914-24235915	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs77912635	chr20:24235924-24235925	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs116827875	chr20:24235944-24235945	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:58)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	16272173	CNVD
Melanoma	18172304	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	19627613	CNVD
colon cancer	17210682	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	16751803	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Colorectal cancer	19359472	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Human rectal carcinomas	16397240	CNVD
Olfactory neuroblastoma	18408657	CNVD
Central neurocytomas	17123091	CNVD
Colorectal cancer	16272173	CNVD
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	20729466	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Ewing''s sarcoma	17952124	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Colorectal cancer	21645411	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Autism	22495311	CNVD
Renal cell carcinoma	18765545	CNVD
Alagille syndrome	17576883	CNVD
Anaplastic large cell lymphoma	18179710	CNVD
Prostate cancer	18632612	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Cancer	21183584	CNVD
Myxofibrosarcoma	16751306	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Breast cancer	16608533	CNVD
Bladder cancer	21909424	CNVD
Esophageal cancer	21851588	CNVD
Breast cancer	17133270	CNVD
Thrombophilia	17576883	CNVD
Myelofibrosis	22110671	CNVD
Mental retardation	21062444	CNVD
Hepatocellular carcinoma	22174799	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Chordoma	18071362	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	21364760	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	21248843	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:24229800-24237200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links