Variant report

Variant	esv1522617
Chromosome Location	chr19:53121004-53121009
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs76405585	chr19:53121009-53121010	Weak transcription Strong transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Ductal carcinoma	22052326	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Acute myeloid leukemia	20729466	CNVD
Ovarian cancer	22174824	CNVD
Multiple myeloma	16616336	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Congenital anomalies of the kidney and urinary tract	18852474	CNVD
Glioblastoma multiforme	17002787	CNVD
Cervical cancer	21062161	CNVD
Primary central nervous system lymphoma	21088137	CNVD
Prostate cancer	16573809	CNVD
small cell lung cancer	20016488	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Myelofibrosis	22110671	CNVD
Gastric adenocarcinoma	19115996	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lung cancer	18438408	CNVD
Basal cell lymphoma	19029149	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ovarian cancer	21781307	CNVD
Neuroblastoma	20406844	CNVD
Cancer	20164920	CNVD
Melanoma	17363583	CNVD
Breast cancer	21785460	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Non-syndromic sensorineural hearing loss	17431168	CNVD

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:53105400-53121200	Weak transcription	Fetal Brain Male	brain
2	chr19:53105800-53129000	Weak transcription	Hela-S3	cervix
3	chr19:53107000-53136600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr19:53112000-53131600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
5	chr19:53112400-53123400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr19:53112800-53123200	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr19:53113200-53121600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr19:53113400-53122000	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
9	chr19:53113800-53123800	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr19:53114200-53122200	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr19:53114800-53121600	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr19:53115000-53122000	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr19:53115200-53121200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr19:53115200-53121600	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
15	chr19:53115200-53122000	ZNF genes & repeats	Primary hematopoietic stem cells	blood
16	chr19:53115400-53121400	ZNF genes & repeats	Primary B cells from peripheral blood	blood
17	chr19:53115400-53121400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
18	chr19:53115400-53121600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr19:53115400-53121600	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
20	chr19:53115400-53121600	Strong transcription	Brain Germinal Matrix	brain
21	chr19:53115400-53122600	ZNF genes & repeats	Primary T regulatory cells fromperipheralblood	blood
22	chr19:53115400-53123800	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr19:53115400-53123800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
24	chr19:53115400-53131800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr19:53115600-53121600	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
26	chr19:53115600-53122400	ZNF genes & repeats	Liver	Liver
27	chr19:53115600-53124600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr19:53115600-53130600	Strong transcription	Placenta	Placenta
29	chr19:53115600-53131200	Strong transcription	Dnd41	blood
30	chr19:53115600-53131400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr19:53116000-53121400	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
32	chr19:53116000-53121400	Strong transcription	Fetal Brain Female	brain
33	chr19:53116000-53122000	ZNF genes & repeats	Thymus	Thymus
34	chr19:53116200-53121400	ZNF genes & repeats	NH-A	brain
35	chr19:53116200-53122200	Strong transcription	Brain Cingulate Gyrus	brain
36	chr19:53116200-53123200	Strong transcription	Brain Anterior Caudate	brain
37	chr19:53116200-53124000	ZNF genes & repeats	GM12878-XiMat	blood
38	chr19:53116200-53131000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr19:53116400-53121400	Strong transcription	Fetal Kidney	kidney
40	chr19:53116400-53123600	Strong transcription	Stomach Smooth Muscle	stomach
41	chr19:53116400-53125000	Strong transcription	Brain Inferior Temporal Lobe	brain
42	chr19:53116400-53127000	Strong transcription	Fetal Muscle Trunk	muscle
43	chr19:53116400-53127000	Strong transcription	Ovary	ovary
44	chr19:53116800-53125000	Strong transcription	Fetal Muscle Leg	muscle
45	chr19:53117000-53123200	Strong transcription	Left Ventricle	heart
46	chr19:53117200-53121600	Strong transcription	Brain Hippocampus Middle	brain
47	chr19:53117200-53127400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
48	chr19:53117400-53121600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
49	chr19:53117600-53122400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr19:53117800-53122000	Strong transcription	Skeletal Muscle Female	skeletal muscle

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