Variant report

Variant	esv15473
Chromosome Location	chr10:38868867-38889034
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:38875692..38876336-chr16:83942673..83943173,2	NB4	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF37A-15	chr10:38872127-38872203	NONHSAT012833
2	lnc-ZNF37A-15	chr10:38873700-38873834	NONHSAT012833

Extended variants
information (count: 3224 )
Associated
traits (count: 38 )

Variant overlapped rSNPs/rCNVs (count:3224 , 50 per page) page: 1 2 3 4 5 6 7 ... 65

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs372123371	chr10:38868871-38868872	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
2	rs374635166	chr10:38868872-38868873	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs368125052	chr10:38868886-38868887	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs367672351	chr10:38868895-38868896	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs374680173	chr10:38868905-38868906	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs368945410	chr10:38868908-38868909	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs551134639	chr10:38868910-38868911	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs372101204	chr10:38868920-38868921	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs202065761	chr10:38868927-38868928	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs375989369	chr10:38868928-38868929	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs199975829	chr10:38868932-38868933	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs369765451	chr10:38868938-38868939	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs373223966	chr10:38868949-38868950	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs377151393	chr10:38868950-38868951	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs369084698	chr10:38868953-38868954	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs527678551	chr10:38868955-38868956	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs373876229	chr10:38868960-38868961	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs201925935	chr10:38868968-38868969	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs377327138	chr10:38868969-38868970	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs542683214	chr10:38868978-38868979	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs375189477	chr10:38868979-38868980	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs200765496	chr10:38868982-38868983	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs548938861	chr10:38868989-38868990	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs547730511	chr10:38868990-38868991	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs370338020	chr10:38868995-38868996	ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs375502958	chr10:38869001-38869002	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
27	rs377077868	chr10:38869011-38869012	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
28	rs372372344	chr10:38869025-38869026	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
29	rs569089370	chr10:38869036-38869037	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
30	rs538132464	chr10:38869037-38869038	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
31	rs201417753	chr10:38869070-38869071	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
32	rs202065134	chr10:38869079-38869080	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
33	rs117074888	chr10:38869086-38869087	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
34	rs201875428	chr10:38869102-38869103	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
35	rs62640613	chr10:38869103-38869104	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
36	rs571421290	chr10:38869105-38869106	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
37	rs111208531	chr10:38869106-38869107	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
38	rs145782275	chr10:38869108-38869109	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
39	rs61839106	chr10:38869111-38869112	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
40	rs111136282	chr10:38869114-38869115	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
41	rs61839107	chr10:38869125-38869126	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
42	rs553065988	chr10:38869134-38869135	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
43	rs61839108	chr10:38869142-38869143	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
44	rs62640147	chr10:38869145-38869146	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
45	rs371897991	chr10:38869161-38869162	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
46	rs111217696	chr10:38869172-38869173	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
47	rs536724054	chr10:38869174-38869175	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
48	rs113642100	chr10:38869176-38869177	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
49	rs535485917	chr10:38869190-38869191	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a
50	rs555718438	chr10:38869216-38869217	ZNF genes & repeats Active TSS	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:38)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD
Medulloblastoma	21163964	CNVD

Chromatin state (count:229 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:38868800-38883800	ZNF genes & repeats	Gastric	stomach
2	chr10:38868800-38884200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
3	chr10:38868800-38888600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
4	chr10:38868800-38888800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr10:38868800-38888800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
6	chr10:38868800-38888800	ZNF genes & repeats	Primary T cells from cord blood	blood
7	chr10:38868800-38888800	ZNF genes & repeats	Adipose Nuclei	Adipose
8	chr10:38868800-38888800	ZNF genes & repeats	Brain Substantia Nigra	brain
9	chr10:38868800-38888800	ZNF genes & repeats	Duodenum Mucosa	Duodenum
10	chr10:38868800-38888800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
11	chr10:38868800-38888800	ZNF genes & repeats	Fetal Lung	lung
12	chr10:38868800-38888800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
13	chr10:38868800-38889000	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
14	chr10:38868800-38889000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
15	chr10:38869000-38869400	ZNF genes & repeats	Esophagus	oesophagus
16	chr10:38869000-38869400	ZNF genes & repeats	Pancreas	Pancrea
17	chr10:38869000-38869400	ZNF genes & repeats	Stomach Mucosa	stomach
18	chr10:38869000-38869400	Active TSS	NHDF-Ad	bronchial
19	chr10:38869000-38870200	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr10:38869000-38870800	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
21	chr10:38869000-38872600	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
22	chr10:38869000-38872600	ZNF genes & repeats	Fetal Heart	heart
23	chr10:38869000-38872600	ZNF genes & repeats	A549	lung
24	chr10:38869000-38874200	ZNF genes & repeats	HMEC	breast
25	chr10:38869000-38874600	ZNF genes & repeats	Primary T helper 17 cells PMA-I stimulated	--
26	chr10:38869000-38874600	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr10:38869000-38874600	ZNF genes & repeats	Spleen	Spleen
28	chr10:38869000-38874800	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
29	chr10:38869000-38874800	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
30	chr10:38869000-38875000	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
31	chr10:38869000-38875000	ZNF genes & repeats	Colonic Mucosa	Colon
32	chr10:38869000-38875000	ZNF genes & repeats	Rectal Smooth Muscle	rectum
33	chr10:38869000-38875200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
34	chr10:38869000-38875200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
35	chr10:38869000-38875400	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
36	chr10:38869000-38875600	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr10:38869000-38875800	ZNF genes & repeats	Colon Smooth Muscle	Colon
38	chr10:38869000-38876000	ZNF genes & repeats	Brain Hippocampus Middle	brain
39	chr10:38869000-38878600	ZNF genes & repeats	Brain Angular Gyrus	brain
40	chr10:38869000-38878800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
41	chr10:38869000-38882400	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
42	chr10:38869000-38882400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
43	chr10:38869000-38882400	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
44	chr10:38869000-38882400	ZNF genes & repeats	K562	blood
45	chr10:38869000-38882800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
46	chr10:38869000-38883600	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
47	chr10:38869000-38883600	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
48	chr10:38869000-38883800	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr10:38869000-38884600	ZNF genes & repeats	Brain Anterior Caudate	brain
50	chr10:38869000-38885000	ZNF genes & repeats	GM12878-XiMat	blood

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