Variant report

Variant	esv15652
Chromosome Location	chr12:104847121-104847840
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr12:104846911-104847234	HEK293-T-REx	kidney:	n/a	chr12:104847059-104847080 chr12:104847100-104847121

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:104822038..104824014-chr12:104845954..104848483,2	K562	blood:
2	chr12:104845965..104848831-chr12:104848976..104852004,3	K562	blood:

Variant related genes	Relation type
CHST11	TF binding region
ENSG00000171310	chromatin interactions

Extended variants
information (count: 38 )
Associated
traits (count: 65 )

Variant overlapped rSNPs/rCNVs (count:38 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs144824598	chr12:104847141-104847142	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
2	rs368679178	chr12:104847143-104847144	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
3	rs532052253	chr12:104847152-104847153	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
4	rs145235773	chr12:104847154-104847155	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
5	rs149174441	chr12:104847185-104847186	Enhancers Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
6	rs562474135	chr12:104847200-104847201	Enhancers Bivalent Enhancer Weak transcription	TF binding region Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
7	rs12315553	chr12:104847314-104847315	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	mRNA abundance
8	rs548373069	chr12:104847323-104847324	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs191114374	chr12:104847338-104847339	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs372140320	chr12:104847388-104847389	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs534035979	chr12:104847398-104847399	Enhancers Bivalent Enhancer Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs547751947	chr12:104847400-104847401	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs552292348	chr12:104847459-104847460	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs566853903	chr12:104847463-104847464	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs17035624	chr12:104847483-104847484	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs558993088	chr12:104847540-104847541	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs575614660	chr12:104847550-104847551	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs11112060	chr12:104847587-104847588	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs76067288	chr12:104847607-104847608	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs574703098	chr12:104847615-104847616	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs11112061	chr12:104847655-104847656	Weak transcription	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs560670638	chr12:104847658-104847659	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs576752333	chr12:104847672-104847673	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs11614105	chr12:104847688-104847689	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs186078032	chr12:104847694-104847695	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs76693974	chr12:104847701-104847702	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs17035626	chr12:104847712-104847713	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs561853121	chr12:104847714-104847715	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs191200977	chr12:104847715-104847716	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs547691126	chr12:104847769-104847770	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs570688679	chr12:104847773-104847774	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs115356171	chr12:104847786-104847787	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs376818147	chr12:104847791-104847792	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs552261034	chr12:104847798-104847799	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs569237540	chr12:104847799-104847800	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs537909501	chr12:104847802-104847803	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs151312994	chr12:104847807-104847808	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs370388111	chr12:104847838-104847839	Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:65)

Disease	PMID	Source
Esophageal cancer	21851588	CNVD
Lung cancer	20668451	CNVD
Breast cancer	20668451	CNVD
Cancer	20668451	CNVD
Ovarian cancer	20668451	CNVD
Pancreas cancer	20668451	CNVD
Prostate cancer	20668451	CNVD
Ewing''s sarcoma	21437220	CNVD
Testicular germ cell tumor	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Malaria	21533027	CNVD
Chronic lymphocytic leukemia	22228453	CNVD
Basal cell lymphoma	17053054	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Autism	22495311	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Breast cancer	21949216	CNVD
Carcinoma ex pleomorphic adenoma	18828159	CNVD
Acute myeloid leukemia	16864856	CNVD
Cancer	21637783	CNVD
Glioblastoma multiforme	21080181	CNVD
Renal cell carcinoma	19461508	CNVD
Burkitt''s lymphoma	18698080	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
small cell lung cancer	20016488	CNVD
Melanoma	18172304	CNVD
Glioblastoma multiforme	21390271	CNVD
Cancer	20164919	CNVD
Breast cancer	22032731	CNVD
Cancer	16751803	CNVD
Biliary cancer	20360734	CNVD
Breast cancer	20360734	CNVD
Coronary artery disease	20360734	CNVD
Crohn''s disease	20360734	CNVD
Hypertension	20360734	CNVD
Rheumatoid arthritis	20360734	CNVD
Type 1 diabetes	20360734	CNVD
Type 2 diabetes	20360734	CNVD
Wilms tumour	21544195	CNVD
Ovarian cancer	21720365	CNVD
Colorectal cancer	16272173	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
lymphocytic leukemia	21291569	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17603634	CNVD
Breast cancer	16397240	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Sudden cardiac death	19188705	CNVD
Breast cancer	17133270	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Neurocytoma	17123091	CNVD
Gastrointestinal stromal cancer	20877625	CNVD
Breast cancer	21509527	CNVD
Breast cancer	21364760	CNVD
Multiple myeloma	16616336	CNVD
Myelofibrosis	22110671	CNVD

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104840000-104849800	Weak transcription	Aorta	Aorta
2	chr12:104844200-104848200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:104844400-104849400	Weak transcription	Spleen	Spleen
4	chr12:104845600-104847400	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr12:104846000-104847400	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr12:104846400-104849800	Weak transcription	Fetal Brain Male	brain
7	chr12:104846600-104849200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr12:104847200-104847400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
9	chr12:104847200-104847400	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
10	chr12:104847400-104848600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links