The 2.0 version of rSNPBase

Variant report

Variant esv1578083
Chromosome Location chr7:5248663-5248665
allele n/a
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr7:5231200-5249200 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr7:5231200-5254200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
3 chr7:5231400-5253800 Weak transcription Fetal Kidney kidney
4 chr7:5231400-5279800 Weak transcription Fetal Brain Male brain
5 chr7:5231600-5252600 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
6 chr7:5231800-5249800 Weak transcription Brain Angular Gyrus brain
7 chr7:5231800-5254200 Weak transcription ES-I3 Cell Line embryonic stem cell
8 chr7:5231800-5273400 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
9 chr7:5232000-5257200 Strong transcription Monocytes-CD14+_RO01746 blood
10 chr7:5232200-5256600 Weak transcription Small Intestine intestine
11 chr7:5232400-5256200 Weak transcription Pancreatic Islets Pancreatic Islet
12 chr7:5232600-5254000 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
13 chr7:5233000-5255200 Weak transcription Primary T killer naive cells fromperipheralblood blood
14 chr7:5233800-5250400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
15 chr7:5234000-5250400 Weak transcription iPS-15b Cell Line embryonic stem cell
16 chr7:5234000-5274800 Weak transcription Stomach Mucosa stomach
17 chr7:5237400-5257400 Strong transcription Primary monocytes fromperipheralblood blood
18 chr7:5237400-5258200 Strong transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
19 chr7:5237400-5272600 Strong transcription Primary T regulatory cells fromperipheralblood blood
20 chr7:5237400-5273400 Strong transcription Dnd41 blood
21 chr7:5239000-5267800 Strong transcription Fetal Intestine Large intestine
22 chr7:5239000-5270800 Strong transcription Placenta Placenta
23 chr7:5240000-5249000 Weak transcription K562 blood
24 chr7:5240200-5251400 Weak transcription Placenta Amnion Placenta Amnion
25 chr7:5240400-5250400 Weak transcription H9 Cell Line embryonic stem cell
26 chr7:5240600-5249200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
27 chr7:5240600-5249200 Weak transcription Duodenum Smooth Muscle Duodenum
28 chr7:5240600-5250000 Weak transcription Brain Hippocampus Middle brain
29 chr7:5240600-5250400 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
30 chr7:5240800-5249000 Weak transcription Brain Inferior Temporal Lobe brain
31 chr7:5240800-5249400 Weak transcription Primary T helper naive cells from peripheral blood blood
32 chr7:5240800-5249600 Weak transcription Right Ventricle heart
33 chr7:5240800-5250000 Weak transcription Aorta Aorta
34 chr7:5240800-5254000 Weak transcription Colonic Mucosa Colon
35 chr7:5241000-5249600 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
36 chr7:5241000-5265600 Weak transcription Psoas Muscle Psoas
37 chr7:5241200-5249200 Weak transcription Skeletal Muscle Female skeletal muscle
38 chr7:5241200-5250000 Weak transcription NHEK skin
39 chr7:5241400-5249200 Weak transcription Rectal Mucosa Donor 31 rectum
40 chr7:5241400-5250000 Weak transcription Brain Substantia Nigra brain
41 chr7:5242000-5249600 Weak transcription Colon Smooth Muscle Colon
42 chr7:5242000-5250000 Weak transcription NH-A brain
43 chr7:5242800-5255200 Weak transcription Fetal Heart heart
44 chr7:5242800-5256400 Weak transcription Primary T killer memory cells from peripheral blood blood
45 chr7:5243200-5248800 Weak transcription Primary hematopoietic stem cells blood
46 chr7:5243200-5249600 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
47 chr7:5243600-5249200 Weak transcription Sigmoid Colon Sigmoid Colon
48 chr7:5243600-5253800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
49 chr7:5243800-5249000 Weak transcription Brain Anterior Caudate brain
50 chr7:5243800-5249000 Weak transcription HSMMtube muscle

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Last update: Aug 31, 2015