Variant report

Variant	esv1583852
Chromosome Location	chr10:28384144-28384152
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:28384110..28385653-chr10:28390069..28392151,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 43 )

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs60550562	chr10:28384145-28384146	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs180868395	chr10:28384151-28384152	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs10528025	chr10:28384152-28384153	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:43)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	21364760	CNVD
abnormal development	18461090	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
small cell lung cancer	20016488	CNVD
Breast cancer	22048815	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	22341455	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:28347000-28412200	Weak transcription	Left Ventricle	heart
2	chr10:28347000-28414600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr10:28364800-28392000	Weak transcription	Gastric	stomach
4	chr10:28364800-28416600	Weak transcription	Pancreas	Pancrea
5	chr10:28367800-28420200	Weak transcription	Rectal Smooth Muscle	rectum
6	chr10:28376000-28438400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr10:28376600-28416600	Weak transcription	Fetal Intestine Large	intestine
8	chr10:28376800-28392000	Weak transcription	Esophagus	oesophagus
9	chr10:28377600-28384200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr10:28377800-28388200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr10:28378000-28418400	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr10:28378400-28386400	Weak transcription	Primary hematopoietic stem cells	blood
13	chr10:28378600-28396200	Weak transcription	Stomach Smooth Muscle	stomach
14	chr10:28378600-28400800	Weak transcription	HSMM	muscle
15	chr10:28378600-28407400	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr10:28378600-28412800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
17	chr10:28378600-28425600	Weak transcription	Colon Smooth Muscle	Colon
18	chr10:28378800-28396400	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr10:28378800-28407400	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr10:28378800-28408400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr10:28379000-28407000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr10:28379200-28386000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr10:28379200-28391800	Weak transcription	Aorta	Aorta
24	chr10:28379200-28394800	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr10:28379200-28395600	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr10:28379200-28406600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr10:28379200-28416600	Weak transcription	Fetal Intestine Small	intestine
28	chr10:28379800-28407800	Weak transcription	Primary T helper cells fromperipheralblood	blood
29	chr10:28380000-28396000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr10:28380000-28398400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
31	chr10:28382200-28384200	Weak transcription	HUVEC	blood vessel
32	chr10:28383600-28384800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr10:28383600-28391600	Weak transcription	Primary T cells from cord blood	blood
34	chr10:28383600-28394800	Weak transcription	Monocytes-CD14+_RO01746	blood

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