Variant report
| Variant | esv1588540 |
|---|---|
| Chromosome Location | chr20:24903699-24904417 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:26 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs147922275 | chr20:24903699-24903700 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs200207398 | chr20:24903700-24903701 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs201052320 | chr20:24903701-24903702 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs572455200 | chr20:24903716-24903717 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs372839716 | chr20:24903720-24903721 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs541146989 | chr20:24903742-24903743 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs552658413 | chr20:24903763-24903764 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs112815873 | chr20:24903790-24903791 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs376234386 | chr20:24903843-24903844 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs143678423 | chr20:24903853-24903854 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs6050137 | chr20:24903854-24903855 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs543706443 | chr20:24903863-24903864 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs113211188 | chr20:24903865-24903866 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs193201100 | chr20:24903872-24903873 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs183387382 | chr20:24903888-24903889 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs6050138 | chr20:24903899-24903900 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 17 | rs199630117 | chr20:24903921-24903922 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 18 | rs191342902 | chr20:24903955-24903956 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 19 | rs539896553 | chr20:24903981-24903982 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 20 | rs111806970 | chr20:24904036-24904037 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 21 | rs111750535 | chr20:24904098-24904099 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 22 | rs112499925 | chr20:24904174-24904175 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 23 | rs113217182 | chr20:24904195-24904196 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 24 | rs138847559 | chr20:24904203-24904204 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 25 | rs367663523 | chr20:24904252-24904253 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 26 | rs532585348 | chr20:24904407-24904408 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:58)
| Disease | PMID | Source |
|---|---|---|
| Wilms tumour | 21544195 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Breast cancer | 16272173 | CNVD |
| Melanoma | 18172304 | CNVD |
| Cancer | 21637783 | CNVD |
| Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Oral cancer | 19627613 | CNVD |
| colon cancer | 17210682 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Thyroid cancer | 19087340 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Cancer | 16751803 | CNVD |
| Chronic lymphocytic leukemia | 21546498 | CNVD |
| Colorectal cancer | 19359472 | CNVD |
| Esophageal squamous carcinoma | 18350619 | CNVD |
| Human rectal carcinomas | 16397240 | CNVD |
| Olfactory neuroblastoma | 18408657 | CNVD |
| Central neurocytomas | 17123091 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Urothelial carcinoma | 21177765 | CNVD |
| Acute myeloid leukemia | 20729466 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Colorectal cancer | 21645411 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Autism | 22495311 | CNVD |
| Renal cell carcinoma | 18765545 | CNVD |
| Alagille syndrome | 17576883 | CNVD |
| Anaplastic large cell lymphoma | 18179710 | CNVD |
| T-cell prolymphocytic leukemia | 17713554 | CNVD |
| Cancer | 21183584 | CNVD |
| Myxofibrosarcoma | 16751306 | CNVD |
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Breast cancer | 16608533 | CNVD |
| Bladder cancer | 21909424 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| Breast cancer | 17133270 | CNVD |
| Thrombophilia | 17576883 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Mental retardation | 21062444 | CNVD |
| Hepatocellular carcinoma | 22174799 | CNVD |
| Barrett''s adenocarcinoma | 18663352 | CNVD |
| Chordoma | 18071362 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Gastric cancer | 22014070 | CNVD |
| Breast cancer | 22522925 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr20:24900400-24906400 | Weak transcription | ES-WA7 Cell Line | embryonic stem cell |
| 2 | chr20:24901400-24915200 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
