Variant report

Variant	esv15966
Chromosome Location	chrX:91540570-92371792
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chrX:91616409-91616522	K562	blood:	n/a	n/a
2	BACH1	chrX:92108709-92108875	K562	blood:	n/a	n/a
3	BATF	chrX:92035172-92035317	GM12878	blood:	n/a	chrX:92035236-92035247 chrX:92035255-92035266
4	BHLHE40	chrX:91795968-91796141	GM12878	blood:	n/a	n/a
5	BRCA1	chrX:92336981-92336989	Hela-S3	cervix:	n/a	n/a
6	BRCA1	chrX:91599916-91599926	Hela-S3	cervix:	n/a	n/a
7	BRCA1	chrX:91776867-91777275	Hela-S3	cervix:	n/a	n/a
8	BRCA1	chrX:91784076-91784465	Hela-S3	cervix:	n/a	n/a
9	BRCA1	chrX:91606667-91606722	Hela-S3	cervix:	n/a	n/a
10	BRCA1	chrX:92132853-92132906	Hela-S3	cervix:	n/a	n/a
11	BRCA1	chrX:91778422-91779122	Hela-S3	cervix:	n/a	n/a
12	CEBPB	chrX:91810752-91810922	Hela-S3	cervix:	n/a	n/a
13	CEBPB	chrX:92020451-92021271	Hela-S3	cervix:	n/a	n/a
14	CEBPB	chrX:92333932-92334299	Hela-S3	cervix:	n/a	chrX:92334116-92334127
15	CEBPB	chrX:91588209-91588532	ECC-1	luminal epithelium:	n/a	n/a
16	CEBPB	chrX:92072065-92072398	IMR90	lung:	n/a	chrX:92072244-92072255
17	CEBPB	chrX:92334018-92334242	HepG2	liver:	n/a	chrX:92334116-92334127
18	CEBPB	chrX:91814194-91814576	Hela-S3	cervix:	n/a	n/a
19	CEBPB	chrX:91761371-91761984	Hela-S3	cervix:	n/a	n/a
20	CEBPB	chrX:92072075-92072339	HepG2	liver:	n/a	chrX:92072244-92072255
21	CEBPB	chrX:92209144-92209280	K562	blood:	n/a	chrX:92209154-92209163 chrX:92209154-92209165
22	CEBPB	chrX:92093828-92094098	IMR90	lung:	n/a	n/a
23	CEBPB	chrX:91888587-91888879	Hela-S3	cervix:	n/a	n/a
24	CEBPB	chrX:91858090-91858337	Hela-S3	cervix:	n/a	n/a
25	CEBPB	chrX:92275005-92275205	IMR90	lung:	n/a	n/a
26	CEBPB	chrX:92274894-92275178	ECC-1	luminal epithelium:	n/a	n/a
27	CEBPB	chrX:91735180-91735380	IMR90	lung:	n/a	n/a
28	CEBPB	chrX:92269520-92269801	H1-hESC	embryonic stem cell:	n/a	n/a
29	CEBPB	chrX:92034839-92035417	Hela-S3	cervix:	n/a	chrX:92034976-92034987 chrX:92034976-92034987
30	CEBPB	chrX:92072125-92072382	Hela-S3	cervix:	n/a	chrX:92072244-92072255
31	CEBPB	chrX:92334025-92334257	ECC-1	luminal epithelium:	n/a	chrX:92334116-92334127
32	CEBPB	chrX:92334014-92334293	K562	blood:	n/a	chrX:92334116-92334127
33	CEBPB	chrX:92269497-92269791	Hela-S3	cervix:	n/a	n/a
34	CEBPB	chrX:91815229-91815487	Hela-S3	cervix:	n/a	n/a
35	CEBPB	chrX:92334001-92334286	H1-hESC	embryonic stem cell:	n/a	chrX:92334116-92334127
36	CEBPB	chrX:91783827-91784403	Hela-S3	cervix:	n/a	n/a
37	CEBPB	chrX:91813498-91813941	Hela-S3	cervix:	n/a	n/a
38	CEBPB	chrX:92186582-92186690	IMR90	lung:	n/a	n/a
39	CEBPB	chrX:92021036-92021299	IMR90	lung:	n/a	n/a
40	CEBPB	chrX:91888592-91888887	IMR90	lung:	n/a	n/a
41	CEBPB	chrX:91587581-91588698	Hela-S3	cervix:	n/a	chrX:91588031-91588044 chrX:91588031-91588044 chrX:91587674-91587685 chrX:91588677-91588688 chrX:91588677-91588688 chrX:91587969-91587981
42	CEBPB	chrX:91944800-91945028	IMR90	lung:	n/a	chrX:91944905-91944916 chrX:91944907-91944916 chrX:91944905-91944918 chrX:91944907-91944916 chrX:91944907-91944916 chrX:91944907-91944916
43	CEBPB	chrX:92269459-92269767	ECC-1	luminal epithelium:	n/a	n/a
44	CEBPB	chrX:92046350-92046690	IMR90	lung:	n/a	chrX:92046509-92046518 chrX:92046509-92046518 chrX:92046509-92046520 chrX:92046509-92046518 chrX:92046509-92046518
45	CEBPB	chrX:92240463-92240822	Hela-S3	cervix:	n/a	n/a
46	CEBPB	chrX:91777042-91777393	Hela-S3	cervix:	n/a	n/a
47	CEBPB	chrX:92334011-92334279	A549	lung:	n/a	chrX:92334116-92334127
48	CEBPB	chrX:92093741-92094113	Hela-S3	cervix:	n/a	n/a
49	CEBPB	chrX:92274892-92275286	Hela-S3	cervix:	n/a	n/a
50	CEBPB	chrX:92020493-92020752	IMR90	lung:	n/a	n/a

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-PCDH11X-1	chrX:92297489-92297941	NONHSAT137831

Variant related genes	Relation type
SNX3P1X	TF binding region
ENSG00000225912	TF binding region
ENSG00000237873	TF binding region
ENSG00000211526	TF binding region
KRT18P11	TF binding region

Extended variants
information (count: 1900 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:1900 , 50 per page) page: 1 2 3 4 5 6 7 ... 38

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs192316090	chrX:91554455-91554456	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs138118959	chrX:91554490-91554491	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs113670349	chrX:91554526-91554527	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs145992870	chrX:91554623-91554624	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs185108472	chrX:91554723-91554724	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs189928814	chrX:91554819-91554820	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs6615355	chrX:91554892-91554893	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs184506643	chrX:91555200-91555201	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs557416613	chrX:91555312-91555313	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs187961661	chrX:91555351-91555352	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs6618953	chrX:91555356-91555357	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs202104309	chrX:91555454-91555455	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs34711906	chrX:91555460-91555461	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs369081600	chrX:91555468-91555469	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs34779304	chrX:91555477-91555478	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs180820352	chrX:91555499-91555500	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs34743966	chrX:91555520-91555521	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs34650998	chrX:91555524-91555525	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs12850121	chrX:91555605-91555606	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs12844199	chrX:91555638-91555639	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs35879424	chrX:91555691-91555692	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs34866929	chrX:91555695-91555696	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs34149619	chrX:91555709-91555710	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs7056651	chrX:91555712-91555713	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs186420505	chrX:91555730-91555731	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs34994128	chrX:91555737-91555738	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs35126957	chrX:91555748-91555749	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs34983930	chrX:91555882-91555883	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs190819198	chrX:91555982-91555983	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs569442619	chrX:91555983-91555984	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs4021175	chrX:91556086-91556087	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs186646745	chrX:91556115-91556116	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs2522779	chrX:91556171-91556172	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs191494390	chrX:91556234-91556235	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs112171340	chrX:91556262-91556263	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs372460430	chrX:91556274-91556275	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs185333230	chrX:91556408-91556409	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs2755294	chrX:91556511-91556512	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs397706272	chrX:91556519-91556520	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs190038041	chrX:91556557-91556558	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs182262839	chrX:91556564-91556565	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs188031869	chrX:91556645-91556646	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs375127993	chrX:91556646-91556647	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs2093340	chrX:91556680-91556681	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs200383063	chrX:91556685-91556686	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs5984925	chrX:91556779-91556780	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs193044688	chrX:91556880-91556881	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs417939	chrX:91556892-91556893	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs373476466	chrX:91556909-91556910	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs7062241	chrX:91556991-91556992	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Neuroblastoma	18923191	CNVD
Burkitt''s lymphoma	20823134	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	21080181	CNVD
Astrocytoma	17387387	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Metanephric adenoma	20802469	CNVD
Medulloblastoma	21979893	CNVD
Schizophrenia	23904455	CNVD
Olfactory neuroblastoma	18408657	CNVD
infertile	22614455	CNVD
Autism	22495311	CNVD
Cancer	20581869	CNVD
Multiple myeloma	20724749	CNVD
Non-syndromic sensorineural hearing loss	18496225	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
lymphocytic leukemia	21291569	CNVD
Follicular lymphoma	20505157	CNVD
primary effusion lymphomas	17116491	CNVD
Testicular germ cell tumor	18059402	CNVD
Testicular cancer	18059402	CNVD
Seminomas	18059402	CNVD
Glioblastoma multiforme	19960244	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	17387387	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Cancer	22429812	CNVD
Cancer	16751803	CNVD
Astrocytoma	22246337	CNVD
Mental retardation	17339581	CNVD
small cell lung cancer	20016488	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Breast cancer	21364760	CNVD
Pancreatic cancer	17952125	CNVD
Mental retardation	20877625	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Alcoholism	21790672	CNVD

Chromatin state (count:158 , 50 per page) page: 1 2 3 4

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chrX:91554400-91557200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chrX:91587800-91589000	Enhancers	Hela-S3	cervix
3	chrX:91605400-91608200	Enhancers	Hela-S3	cervix
4	chrX:91620400-91620600	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
5	chrX:91620600-91620800	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chrX:91628000-91629800	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chrX:91666800-91667000	Enhancers	HSMM	muscle
8	chrX:91680000-91680400	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chrX:91714400-91716800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chrX:91775800-91780000	Enhancers	Hela-S3	cervix
11	chrX:91780000-91783800	Weak transcription	Hela-S3	cervix
12	chrX:91783800-91784400	Enhancers	Hela-S3	cervix
13	chrX:91795400-91795600	Enhancers	ES-I3 Cell Line	embryonic stem cell
14	chrX:91813200-91815200	Enhancers	Hela-S3	cervix
15	chrX:91825200-91825400	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chrX:91825400-91826800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chrX:91826800-91827400	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chrX:91826800-91827400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chrX:91827400-91828800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chrX:91827400-91829600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chrX:91828800-91829600	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chrX:91829600-91830200	Enhancers	iPS-15b Cell Line	embryonic stem cell
23	chrX:91830200-91841800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chrX:91835000-91836000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
25	chrX:91837800-91848400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
26	chrX:91840200-91843800	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chrX:91841600-91842400	Enhancers	Hela-S3	cervix
28	chrX:91841800-91842000	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chrX:91841800-91842000	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chrX:91841800-91842200	Enhancers	iPS-15b Cell Line	embryonic stem cell
31	chrX:91842000-91842200	Enhancers	iPS-18 Cell Line	embryonic stem cell
32	chrX:91842200-91843800	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chrX:91842200-91843800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chrX:91842200-91843800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
35	chrX:91842800-91843800	Weak transcription	HUES64 Cell Line	embryonic stem cell
36	chrX:91843800-91844000	Enhancers	ES-I3 Cell Line	embryonic stem cell
37	chrX:91843800-91844400	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chrX:91843800-91845000	Enhancers	HUES6 Cell Line	embryonic stem cell
39	chrX:91843800-91845200	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chrX:91843800-91845800	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chrX:91843800-91845800	Enhancers	iPS-15b Cell Line	embryonic stem cell
42	chrX:91844000-91844200	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chrX:91844000-91846400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chrX:91844200-91844800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chrX:91844400-91844800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
46	chrX:91844800-91845000	Enhancers	iPS-20b Cell Line	embryonic stem cell
47	chrX:91844800-91847000	Enhancers	iPS-18 Cell Line	embryonic stem cell
48	chrX:91845000-91845200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
49	chrX:91845000-91845200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
50	chrX:91845200-91845400	Enhancers	HUES6 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links