Variant report

Variant	esv1617266
Chromosome Location	chr19:22256877-22256878
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 41 )

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs398034270	chr19:22256878-22256879	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:41)

Disease	PMID	Source
Medulloblastoma	16783165	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Prostate cancer	16573809	CNVD
Chordoma	18071362	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Oligodendroglial tumors	17285580	CNVD
Oral cancer	21386901	CNVD
ovarian endometriomas	16273235	CNVD
Endometrial cancer	22040021	CNVD
Acute myeloid leukemia	16864856	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Cervical cancer	21063398	CNVD
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	21248843	CNVD
Lung cancer	18438408	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Myelofibrosis	22110671	CNVD
Cancer	21183584	CNVD
Colorectal cancer	20459617	CNVD
small cell lung cancer	20016488	CNVD
Ductal carcinoma	22052326	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Cancer	20164920	CNVD
Non-syndromic sensorineural hearing loss	19587683	CNVD

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:22235800-22258000	Weak transcription	Aorta	Aorta
2	chr19:22235800-22258200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr19:22235800-22262200	Weak transcription	Gastric	stomach
4	chr19:22235800-22270400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr19:22236000-22257200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr19:22236000-22258000	Weak transcription	Pancreas	Pancrea
7	chr19:22236200-22262400	Weak transcription	Ovary	ovary
8	chr19:22246600-22259800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr19:22250200-22258200	Weak transcription	Primary B cells from peripheral blood	blood
10	chr19:22253200-22272400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr19:22254000-22257800	Weak transcription	Primary T helper cells PMA-I stimulated	--
12	chr19:22255000-22257200	Weak transcription	Fetal Intestine Large	intestine
13	chr19:22255600-22258800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
14	chr19:22255600-22259800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr19:22256200-22258000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr19:22256200-22260600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr19:22256400-22258800	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
18	chr19:22256400-22259000	Strong transcription	Primary T helper cells fromperipheralblood	blood
19	chr19:22256600-22257800	Weak transcription	Primary T cells from cord blood	blood
20	chr19:22256600-22258200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr19:22256800-22260000	Weak transcription	Fetal Lung	lung
22	chr19:22256800-22262000	Weak transcription	Fetal Muscle Trunk	muscle

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