Variant report

Variant	esv16411
Chromosome Location	chr10:39006088-39049186
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:139)
CpG islands
(count:427)
Chromatin interactive
region (count:0)
LncRNA
region (count:15)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:139 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BATF	chr10:39011913-39012229	GM12878	blood:	n/a	n/a
2	BATF	chr10:39012008-39012251	GM12878	blood:	n/a	n/a
3	BATF	chr10:39026887-39027079	GM12878	blood:	n/a	n/a
4	CEBPB	chr10:39037900-39037952	A549	lung:	n/a	n/a
5	CTCF	chr10:39040660-39040679	Kidney_OC	kidney:	n/a	n/a
6	CTCF	chr10:39038829-39038908	LNCaP	prostate:	n/a	n/a
7	CTCF	chr10:39022260-39022342	GM13976	blood:	n/a	n/a
8	EBF1	chr10:39007953-39008125	GM12878	blood:	n/a	n/a
9	EP300	chr10:39011094-39011413	GM12878	blood:	n/a	chr10:39011317-39011331
10	EP300	chr10:39016635-39016982	GM12878	blood:	n/a	n/a
11	EP300	chr10:39022205-39022475	GM12878	blood:	n/a	n/a
12	FOS	chr10:39048012-39048048	MCF10A-Er-Src	breast:	n/a	n/a
13	FOS	chr10:39048030-39048048	MCF10A-Er-Src	breast:	n/a	n/a
14	FOSL2	chr10:39022104-39022588	HepG2	liver:	n/a	n/a
15	FOSL2	chr10:39025556-39025786	HepG2	liver:	n/a	n/a
16	FOSL2	chr10:39022052-39022486	HepG2	liver:	n/a	n/a
17	FOSL2	chr10:39047741-39048392	HepG2	liver:	n/a	chr10:39048064-39048075 chr10:39048067-39048075 chr10:39048066-39048076 chr10:39048065-39048077 chr10:39048066-39048076
18	FOSL2	chr10:39047876-39048538	HepG2	liver:	n/a	chr10:39048064-39048075 chr10:39048067-39048075 chr10:39048066-39048076 chr10:39048065-39048077 chr10:39048066-39048076
19	FOXA1	chr10:39021989-39022591	HepG2	liver:	n/a	n/a
20	FOXA1	chr10:39048320-39048724	HepG2	liver:	n/a	n/a
21	FOXA2	chr10:39022174-39022450	A549	lung:	n/a	n/a
22	FOXA2	chr10:39047806-39048666	A549	lung:	n/a	n/a
23	GABPA	chr10:39048048-39048262	Hela-S3	cervix:	n/a	n/a
24	GABPA	chr10:39035470-39035614	Hela-S3	cervix:	n/a	n/a
25	GABPA	chr10:39035409-39035605	Hela-S3	cervix:	n/a	n/a
26	GABPA	chr10:39048050-39048334	Hela-S3	cervix:	n/a	n/a
27	GATA2	chr10:39037938-39038277	K562	blood:	n/a	n/a
28	GATA2	chr10:39037477-39037764	K562	blood:	n/a	n/a
29	GATA2	chr10:39038305-39038667	K562	blood:	n/a	n/a
30	GATA2	chr10:39047756-39048080	K562	blood:	n/a	chr10:39048065-39048074
31	GATA2	chr10:39039407-39039684	K562	blood:	n/a	n/a
32	GATA2	chr10:39038935-39039176	K562	blood:	n/a	n/a
33	HEY1	chr10:39022208-39022491	HepG2	liver:	n/a	n/a
34	HEY1	chr10:39048055-39048258	HepG2	liver:	n/a	n/a
35	HEY1	chr10:39022237-39022561	K562	blood:	n/a	n/a
36	IRF4	chr10:39021946-39022594	GM12878	blood:	n/a	n/a
37	IRF4	chr10:39022165-39022502	GM12878	blood:	n/a	n/a
38	JUND	chr10:39014313-39014546	HepG2	liver:	n/a	n/a
39	JUND	chr10:39048354-39048632	HepG2	liver:	n/a	n/a
40	JUND	chr10:39022195-39022402	HepG2	liver:	n/a	n/a
41	JUND	chr10:39022150-39022530	HepG2	liver:	n/a	n/a
42	JUND	chr10:39047923-39048334	HepG2	liver:	n/a	chr10:39048067-39048075 chr10:39048066-39048076 chr10:39048065-39048077 chr10:39048066-39048076
43	JUND	chr10:39048024-39048247	HepG2	liver:	n/a	chr10:39048067-39048075 chr10:39048066-39048076 chr10:39048065-39048077 chr10:39048066-39048076
44	JUND	chr10:39011851-39012027	HepG2	liver:	n/a	n/a
45	MYC	chr10:39033272-39033386	H1-hESC	embryonic stem cell:	n/a	n/a
46	PAX5	chr10:39024156-39024528	GM12878	blood:	n/a	n/a
47	PAX5	chr10:39022123-39022463	GM12878	blood:	n/a	n/a
48	PAX5	chr10:39006626-39007183	GM12878	blood:	n/a	chr10:39006839-39006857
49	PAX5	chr10:39016482-39016643	GM12878	blood:	n/a	n/a
50	PAX5	chr10:39007401-39007595	GM12878	blood:	n/a	n/a

(count:427 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr10:39023768-39023818	H1-hESC	embryonic stem cell:	embryo
2	chr10:39024195-39024245	HRE	kidney:	n/a
3	chr10:39023676-39023726	AG04449	skin:	fetal
4	chr10:39024195-39024245	AoSMC	blood vessel:	n/a
5	chr10:39020983-39021033	NT2-D1	testis:	n/a
6	chr10:39023676-39023726	SKMC	muscle:	n/a
7	chr10:39023095-39023145	H1-hESC	embryonic stem cell:	embryo
8	chr10:39023095-39023145	BJ	skin:	n/a
9	chr10:39024087-39024137	AG04450	lung:	fetal
10	chr10:39023676-39023726	HEK293	kidney:	embryo
11	chr10:39023045-39023095	HNPCEpiC	eye:	n/a
12	chr10:39020983-39021033	NHBE	bronchial:	n/a
13	chr10:39024087-39024137	NHDF-neo	bronchial:	n/a
14	chr10:39023676-39023726	HRCEpiC	kidney:	n/a
15	chr10:39023676-39023726	AG09309	skin:	n/a
16	chr10:39023095-39023145	HRPEpiC	eye:	n/a
17	chr10:39024087-39024137	MCF10A-Er-Src	breast:	n/a
18	chr10:39023768-39023818	MCF-7	breast:	n/a
19	chr10:39023768-39023818	RPTEC	kidney:	n/a
20	chr10:39024195-39024245	GM06990	blood:	n/a
21	chr10:39023095-39023145	NH-A	brain:	n/a
22	chr10:39023095-39023145	HCT-116	colon:	n/a
23	chr10:39024087-39024137	HepG2	liver:	n/a
24	chr10:39024195-39024245	ProgFib	skin:	n/a
25	chr10:39023676-39023726	NHDF-neo	bronchial:	n/a
26	chr10:39024195-39024245	AG04450	lung:	fetal
27	chr10:39024195-39024245	T-47D	breast:	n/a
28	chr10:39023676-39023726	Hepatocyte	liver:	n/a
29	chr10:39024195-39024245	HRCEpiC	kidney:	n/a
30	chr10:39020983-39021033	HCM	heart:	n/a
31	chr10:39020983-39021033	HCT-116	colon:	n/a
32	chr10:39023095-39023145	HepG2	liver:	n/a
33	chr10:39023095-39023145	HCPEpiC	choroid plexus:	n/a
34	chr10:39024195-39024245	SK-N-MC	brain:	n/a
35	chr10:39020983-39021033	HCF	heart:	n/a
36	chr10:39020983-39021033	H1-hESC	embryonic stem cell:	embryo
37	chr10:39023095-39023145	ovcar-3	ovarian:	n/a
38	chr10:39023768-39023818	Caco-2	colon:	n/a
39	chr10:39024087-39024137	HMEC	breast:	n/a
40	chr10:39023676-39023726	HRPEpiC	eye:	n/a
41	chr10:39023045-39023095	Caco-2	colon:	n/a
42	chr10:39024195-39024245	NHDF-neo	bronchial:	n/a
43	chr10:39023676-39023726	PANC-1	pancreas:	n/a
44	chr10:39024087-39024137	GM12891	blood:	n/a
45	chr10:39023768-39023818	CMK	blood:	n/a
46	chr10:39024195-39024245	ovcar-3	ovarian:	n/a
47	chr10:39020983-39021033	SK-N-MC	brain:	n/a
48	chr10:39024087-39024137	T-47D	breast:	n/a
49	chr10:39023045-39023095	GM06990	blood:	n/a
50	chr10:39023045-39023095	HRCEpiC	kidney:	n/a

No data

(count:15 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF37A-5	chr10:39006326-39006412	ENSG00000234541
2	lnc-SEPT7L-2	chr10:39022035-39022206	NONHSAT012838
3	lnc-ZNF37A-5	chr10:39012283-39012507	ENSG00000234541
4	lnc-ZNF37A-5	chr10:39011180-39011260	ENSG00000234541
5	lnc-SEPT7L-2	chr10:39019400-39019542	NONHSAT012836
6	lnc-ZNF37A-18	chr10:39046332-39046418	NONHSAT012840
7	lnc-SEPT7L-2	chr10:39017958-39018085	NONHSAT012836
8	lnc-SEPT7L-2	chr10:39017958-39018085	NONHSAT012838
9	lnc-ZNF37A-5	chr10:39011180-39011260	NONHSAT012839
10	lnc-SEPT7L-2	chr10:39019400-39019542	NONHSAT012838
11	lnc-ZNF37A-5	chr10:39010984-39011260	ENSG00000234541
12	lnc-SEPT7L-2	chr10:39022035-39022206	NONHSAT012836
13	lnc-ZNF37A-5	chr10:39012283-39012360	NONHSAT012839
14	lnc-ZNF37A-5	chr10:39012283-39012607	ENSG00000234541
15	lnc-ZNF37A-5	chr10:39006326-39006412	NONHSAT012839

No data

Variant related genes	Relation type
CHEK2P5	TF binding region
CHEK2P5	CpG island

Extended variants
information (count: 787 )
Associated
traits (count: 40 )

Variant overlapped rSNPs/rCNVs (count:787 , 50 per page) page: 1 2 3 4 5 6 7 ... 16

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs182478947	chr10:39006329-39006330	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs538206901	chr10:39006333-39006334	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs558114496	chr10:39006335-39006336	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs577987006	chr10:39006342-39006343	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs533949944	chr10:39006372-39006373	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs4070134	chr10:39006382-39006383	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs187115911	chr10:39006387-39006388	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs573800052	chr10:39006390-39006391	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs191730978	chr10:39006394-39006395	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs534947836	chr10:39011008-39011009	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs189153831	chr10:39011017-39011018	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs183452431	chr10:39011029-39011030	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs574341359	chr10:39011040-39011041	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs74656471	chr10:39011062-39011063	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs75120951	chr10:39011063-39011064	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs79746246	chr10:39011076-39011077	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs556973670	chr10:39011080-39011081	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs576541018	chr10:39011092-39011093	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs192490904	chr10:39011104-39011105	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs369095325	chr10:39011105-39011106	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs185811636	chr10:39011106-39011107	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs541741370	chr10:39011116-39011117	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs76582232	chr10:39011126-39011127	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs561435797	chr10:39011132-39011133	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs2208481	chr10:39011138-39011139	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs2310211	chr10:39011152-39011153	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
27	rs563731484	chr10:39011156-39011157	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs189075061	chr10:39011173-39011174	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
29	rs552380638	chr10:39011175-39011176	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs565918447	chr10:39011193-39011194	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs144319426	chr10:39011213-39011214	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs77404004	chr10:39011215-39011216	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs548436888	chr10:39011218-39011219	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
34	rs568269497	chr10:39011219-39011220	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs77501316	chr10:39011230-39011231	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs559981175	chr10:39011234-39011235	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs180982568	chr10:39011244-39011245	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs182919009	chr10:39012283-39012284	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs141334007	chr10:39012288-39012289	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs368981247	chr10:39012301-39012302	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs555511177	chr10:39012304-39012305	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs186866282	chr10:39012323-39012324	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs574709851	chr10:39012337-39012338	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs573267039	chr10:39012347-39012348	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs568051428	chr10:39012348-39012349	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs541991398	chr10:39012352-39012353	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs562225035	chr10:39012406-39012407	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs146995177	chr10:39012407-39012408	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs1672814	chr10:39012502-39012503	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs563998373	chr10:39012505-39012506	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:40)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Prostate cancer	18632612	CNVD
Glioblastoma multiforme	22286061	CNVD
Colorectal cancer	20459617	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Central neurocytomas	17123091	CNVD
Neurocytoma	17123091	CNVD
small cell lung cancer	20016488	CNVD
Schizophrenia	20967226	CNVD
Myelofibrosis	22110671	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21509527	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:39023200-39024000	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:39029800-39031600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
3	chr10:39029800-39033800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:39034400-39035800	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr10:39034400-39036000	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr10:39034600-39036000	ZNF genes & repeats	Pancreas	Pancrea

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