Variant report

Variant	esv16414
Chromosome Location	chr5:69212062-69284020
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:294)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:6)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:294 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BATF	chr5:69236505-69236709	GM12878	blood:	n/a	n/a
2	BATF	chr5:69253137-69253466	GM12878	blood:	n/a	n/a
3	BATF	chr5:69253202-69253437	GM12878	blood:	n/a	n/a
4	BCL11A	chr5:69242566-69242739	GM12878	blood:	n/a	n/a
5	BCL11A	chr5:69212362-69212551	GM12878	blood:	n/a	n/a
6	BCL11A	chr5:69231598-69231858	GM12878	blood:	n/a	n/a
7	BCL11A	chr5:69243699-69243896	GM12878	blood:	n/a	n/a
8	BCL11A	chr5:69253171-69253353	GM12878	blood:	n/a	n/a
9	BCL11A	chr5:69253130-69253369	GM12878	blood:	n/a	n/a
10	BCL11A	chr5:69243551-69243898	GM12878	blood:	n/a	n/a
11	BCL11A	chr5:69218043-69218231	GM12878	blood:	n/a	n/a
12	BCL11A	chr5:69216543-69216725	GM12878	blood:	n/a	n/a
13	BHLHE40	chr5:69233557-69233796	HepG2	liver:	n/a	n/a
14	BHLHE40	chr5:69214547-69214780	HepG2	liver:	n/a	n/a
15	BHLHE40	chr5:69242512-69242923	HepG2	liver:	n/a	n/a
16	BHLHE40	chr5:69274570-69274812	HepG2	liver:	n/a	n/a
17	CTCF	chr5:69281212-69281319	Medullo	brain:	n/a	n/a
18	CTCF	chr5:69281252-69281317	Spleen_OC	spleen:	n/a	n/a
19	CTCF	chr5:69267424-69267487	Kidney_OC	kidney:	n/a	n/a
20	CTCF	chr5:69281066-69281401	A549	lung:	n/a	n/a
21	CTCF	chr5:69222961-69223017	GM13976	blood:	n/a	n/a
22	CTCF	chr5:69245460-69245525	GM10248	blood:	n/a	n/a
23	EBF1	chr5:69253109-69253360	GM12878	blood:	n/a	n/a
24	EBF1	chr5:69242346-69242533	GM12878	blood:	n/a	n/a
25	EBF1	chr5:69240214-69240434	GM12878	blood:	n/a	n/a
26	EBF1	chr5:69218427-69218626	GM12878	blood:	n/a	n/a
27	EBF1	chr5:69253053-69253456	GM12878	blood:	n/a	n/a
28	EBF1	chr5:69244067-69244404	GM12878	blood:	n/a	n/a
29	EBF1	chr5:69231716-69231909	GM12878	blood:	n/a	n/a
30	EP300	chr5:69218856-69219043	GM12878	blood:	n/a	n/a
31	EP300	chr5:69215019-69215291	GM12878	blood:	n/a	n/a
32	EP300	chr5:69242503-69242862	GM12878	blood:	n/a	n/a
33	EP300	chr5:69216532-69216949	GM12878	blood:	n/a	chr5:69216907-69216917
34	EP300	chr5:69225072-69225507	GM12878	blood:	n/a	n/a
35	EP300	chr5:69242550-69242781	GM12878	blood:	n/a	n/a
36	EP300	chr5:69253161-69253500	GM12878	blood:	n/a	n/a
37	EP300	chr5:69217912-69218161	GM12878	blood:	n/a	n/a
38	EP300	chr5:69241614-69241869	GM12878	blood:	n/a	n/a
39	FOSL2	chr5:69236330-69236876	HepG2	liver:	n/a	n/a
40	FOSL2	chr5:69216504-69216820	HepG2	liver:	n/a	n/a
41	FOSL2	chr5:69242469-69242862	HepG2	liver:	n/a	n/a
42	FOSL2	chr5:69250629-69250946	HepG2	liver:	n/a	n/a
43	FOSL2	chr5:69237738-69238030	HepG2	liver:	n/a	n/a
44	FOSL2	chr5:69218484-69218773	HepG2	liver:	n/a	n/a
45	FOSL2	chr5:69243606-69244144	HepG2	liver:	n/a	n/a
46	FOSL2	chr5:69237251-69237505	HepG2	liver:	n/a	n/a
47	FOSL2	chr5:69238391-69238648	HepG2	liver:	n/a	n/a
48	FOSL2	chr5:69262862-69263185	HepG2	liver:	n/a	n/a
49	FOSL2	chr5:69223514-69223834	HepG2	liver:	n/a	n/a
50	FOSL2	chr5:69236457-69236871	HepG2	liver:	n/a	n/a

No data

(count:6 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SERF1B-1	chr5:69282778-69285949	ENSG00000250763.1
2	lnc-SERF1B-1	chr5:69271565-69271679	NONHSAT101945
3	lnc-SERF1B-1	chr5:69274291-69274436	NONHSAT101945
4	lnc-SERF1B-1	chr5:69274357-69274884	ENSG00000250763.1
5	lnc-SERF1B-4	chr5:69249157-69249922	NONHSAT101946
6	lnc-SERF1B-1	chr5:69216553-69216694	NONHSAT101945

No data

Variant related genes	Relation type
CDH12P2	TF binding region
ENSG00000198237	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 115 )

Variant overlapped rSNPs/rCNVs (count:20 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs201136499	chr5:69212288-69212289	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
2	rs62374350	chr5:69212720-69212721	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
3	rs76415406	chr5:69215959-69215960	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
4	rs544264030	chr5:69249184-69249185	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs556132538	chr5:69249185-69249186	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs185867375	chr5:69249190-69249191	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs200905570	chr5:69249191-69249192	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs368527962	chr5:69249550-69249551	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs542531312	chr5:69249561-69249562	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs560589056	chr5:69249583-69249584	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs527915138	chr5:69249602-69249603	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs201323947	chr5:69249725-69249726	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs202046722	chr5:69249829-69249830	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs62374795	chr5:69274434-69274435	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs552068299	chr5:69274436-69274437	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs368087179	chr5:69281393-69281394	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
17	rs554482825	chr5:69281720-69281721	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
18	rs572395888	chr5:69281733-69281734	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
19	rs555333590	chr5:69281740-69281741	Inactive region	TF binding region	1 gene(s)	Overlapped CNVs	n/a
20	rs79380107	chr5:69283377-69283378	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:115)

Disease	PMID	Source
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Metanephric adenoma	20802469	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Medulloblastoma	21979893	CNVD
Phyllodes tumor	17334353	CNVD
Malaria	21533027	CNVD
Renal cell carcinoma	19461508	CNVD
Cancer	20164919	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Multiple myeloma	17550852	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ovarian cancer	21781307	CNVD
DNA damage stimulus	22844521	CNVD
DNA repair	22844521	CNVD
Breast cancer	21785460	CNVD
Spinal muscular atrophy	22422766	CNVD
Spinal muscular atrophy	22558076	CNVD
Spinal muscular atrophy	21320981	CNVD
Spinal muscular atrophy	21762474	CNVD
Cancer	16751803	CNVD
Intellectual disability	22102821	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Breast cancer	17603634	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Melanoma	18172304	CNVD
Glioma	20126413	CNVD
Breast cancer	22032731	CNVD
Prostate cancer	21965145	CNVD
Esophageal cancer	20955586	CNVD
Congenital anomalies of the kidney and urinary tract	18694510	CNVD
Ovarian cancer	20844748	CNVD
Breast cancer	17393978	CNVD
Cancer	21359685	CNVD
Non-small cell lung cancer	21829676	CNVD
adenomatous polyposis	22470819	CNVD
Cancer	22429812	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Liposarcoma	21253554	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Breast cancer	21858162	CNVD
Hepatocellular carcinoma	16750200	CNVD
Leukemia	17361228	CNVD
Myelodysplastic syndrome	18508791	CNVD
5q-syndrome	17576883	CNVD
Gastric cancer	17908304	CNVD
Lung cancer	16740712	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Urothelial carcinoma	21177765	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Bladder cancer	21909424	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Barrett''s syndrome	19417022	CNVD
small cell lung cancer	20016488	CNVD
Lung cancer	18438408	CNVD
Breast cancer	17133270	CNVD
Breast cancer	19602461	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Retinoblastoma	22278416	CNVD
Bipolar disorder	18458673	CNVD
Thyroid cancer	19087340	CNVD
abnormal development	18461090	CNVD
Merkel cell carcinoma	19020549	CNVD
Squamous cell cancer	20885788	CNVD
Neurodevelopmental disorder	22521361	CNVD
Prostate cancer	18632612	CNVD
Ovarian cancer	21720365	CNVD
Breast cancer	21045282	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Myelodysplastic syndrome	18663149	CNVD
Spinal muscular atrophy	15981080	CNVD
Spinal muscular atrophy	18839960	CNVD
Spinal muscular atrophy	19716110	CNVD
Sezary syndrome	18413736	CNVD
Ewing''s sarcoma	17952124	CNVD
Breast cancer	21990379	CNVD
Hirschsprung''s Disease	21712996	CNVD
Apoptosis	19488400	CNVD
Breast cancer	22048815	CNVD
Myelofibrosis	22110671	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Acute monocytic leukemia	16498392	CNVD
Colorectal cancer	20459617	CNVD
Gastric adenocarcinoma	19115996	CNVD
Spinal muscular atrophy	17160897	CNVD
Spinal muscular atrophy	17668391	CNVD
Spinal muscular atrophy	17668395	CNVD
Glioblastoma multiforme	22286061	CNVD
craniofacial dysmorphism	21918468	CNVD
Multiple myeloma	16616336	CNVD
Prostate cancer	16461572	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Pseudo-TORCH syndrome	20727516	CNVD
Medullary thyroid carcinoma	18765511	CNVD
Obesity	21131291	CNVD
early-passage human iPS cells	21368824	CNVD
Breast cancer	21364760	CNVD
Mental retardation	20877625	CNVD
Non-syndromic sensorineural hearing loss	17289997	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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