Variant report
| Variant | esv1667184 |
|---|---|
| Chromosome Location | chr2:209236582-209236586 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:5)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:5 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | FOS | chr2:209236324-209236589 | MCF10A-Er-Src | breast: | n/a | chr2:209236468-209236478 chr2:209236468-209236478 chr2:209236468-209236478 chr2:209236470-209236477 chr2:209236469-209236477 chr2:209236468-209236478 chr2:209236469-209236477 |
| 2 | FOSL2 | chr2:209236300-209236611 | HepG2 | liver: | n/a | chr2:209236468-209236478 chr2:209236468-209236478 chr2:209236468-209236478 chr2:209236470-209236477 chr2:209236469-209236477 chr2:209236468-209236478 chr2:209236469-209236477 |
| 3 | JUND | chr2:209236281-209236614 | HepG2 | liver: | n/a | chr2:209236468-209236478 chr2:209236468-209236478 chr2:209236468-209236478 chr2:209236470-209236477 chr2:209236469-209236477 chr2:209236468-209236478 chr2:209236467-209236478 chr2:209236469-209236477 |
| 4 | PBX3 | chr2:209236368-209236749 | SK-N-SH | brain: | n/a | n/a |
| 5 | RCOR1 | chr2:209235701-209236602 | K562 | blood: | n/a | n/a |
| No data |
| No data |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000265454 | TF binding region |
| No data |
Variant related diseases (count:60)
| Disease | PMID | Source |
|---|---|---|
| Ewing''s sarcoma | 21437220 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Ependymoma | 16718352 | CNVD |
| Melanoma | 18172304 | CNVD |
| Cancer | 16751803 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Acute lymphoblastic leukemia | 21980252 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Testicular germ cell tumor | 18059402 | CNVD |
| Breast cancer | 16272173 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Cancer | 21637783 | CNVD |
| Non-syndromic sensorineural hearing loss | 18471307 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Liposarcoma | 21253554 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Embryonal rhabdomyosarcoma | 16790082 | CNVD |
| Autism | 16446308 | CNVD |
| Autism | 19401682 | CNVD |
| Colorectal cancer | 16272173 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| Acute myeloid leukemia | 20729466 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Biliary cancer | 20360734 | CNVD |
| Breast cancer | 20360734 | CNVD |
| Coronary artery disease | 20360734 | CNVD |
| Crohn''s disease | 20360734 | CNVD |
| Hypertension | 20360734 | CNVD |
| Rheumatoid arthritis | 20360734 | CNVD |
| Type 1 diabetes | 20360734 | CNVD |
| Type 2 diabetes | 20360734 | CNVD |
| Urothelial carcinoma | 21177765 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Cervical cancer | 21062161 | CNVD |
| Adenoid cystic carcinoma | 18698036 | CNVD |
| Non-muscle invasive bladder neoplasm | 19445696 | CNVD |
| Non-small cell lung cancer | 21829676 | CNVD |
| Autism | 20808228 | CNVD |
| Renal cell carcinoma | 18765545 | CNVD |
| Ovarian cancer | 19193619 | CNVD |
| Non-small cell lung cancer | 18676828 | CNVD |
| Oral squamous cell carcinoma | 17134496 | CNVD |
| Myofibroblastic sarcoma | 19369631 | CNVD |
| Chordoma | 18071362 | CNVD |
| Breast cancer | 20668451 | CNVD |
| Cancer | 20668451 | CNVD |
| Lung cancer | 20668451 | CNVD |
| Ovarian cancer | 20668451 | CNVD |
| Pancreas cancer | 20668451 | CNVD |
| Prostate cancer | 20668451 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Schizophrenia | 18923514 | CNVD |
| Schizophrenia | 22241247 | CNVD |
| Non-syndromic sensorineural hearing loss | 15273396 | CNVD |
| Urothelial cell carcinoma | 18451213 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:209233000-209240200 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
| 2 | chr2:209233400-209236600 | Enhancers | HepG2 | liver |
| 3 | chr2:209233800-209236600 | Enhancers | NHDF-Ad | bronchial |
| 4 | chr2:209234000-209236600 | Enhancers | Adipose Derived Mesenchymal Stem Cell Cultured Cells | ES cell derived |
| 5 | chr2:209235200-209236600 | Enhancers | K562 | blood |
| 6 | chr2:209236000-209240200 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
