Variant report

Variant	esv16717
Chromosome Location	chr15:34662754-34875351
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2075)
CpG islands
(count:2258)
Chromatin interactive
region (count:49)
LncRNA
region (count:14)
Mature miRNA
region (count: 4)
miRNA target
sites (count:2)

(count:2075 , 50 per page) page: 1 2 3 4 5 6 7 ... 42

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr15:34781246-34781587	K562	blood:	n/a	n/a
2	ARID3A	chr15:34731584-34731600	K562	blood:	n/a	n/a
3	ARID3A	chr15:34869965-34870045	HepG2	liver:	n/a	n/a
4	ARID3A	chr15:34875226-34875237	K562	blood:	n/a	n/a
5	ATF1	chr15:34808283-34808324	K562	blood:	n/a	n/a
6	ATF1	chr15:34870112-34870339	K562	blood:	n/a	n/a
7	ATF1	chr15:34761374-34761389	K562	blood:	n/a	n/a
8	ATF1	chr15:34807442-34807640	K562	blood:	n/a	n/a
9	ATF2	chr15:34662115-34662776	GM12878	blood:	n/a	n/a
10	ATF3	chr15:34781262-34781502	K562	blood:	n/a	n/a
11	BACH1	chr15:34806578-34807213	H1-hESC	embryonic stem cell:	n/a	n/a
12	BACH1	chr15:34729369-34729390	H1-hESC	embryonic stem cell:	n/a	n/a
13	BATF	chr15:34842238-34842949	GM12878	blood:	n/a	n/a
14	BATF	chr15:34762243-34762455	GM12878	blood:	n/a	n/a
15	BATF	chr15:34841508-34841849	GM12878	blood:	n/a	n/a
16	BATF	chr15:34841482-34841862	GM12878	blood:	n/a	n/a
17	BATF	chr15:34695287-34695628	GM12878	blood:	n/a	n/a
18	BATF	chr15:34808073-34808311	GM12878	blood:	n/a	n/a
19	BATF	chr15:34815930-34816436	GM12878	blood:	n/a	n/a
20	BATF	chr15:34696017-34696728	GM12878	blood:	n/a	n/a
21	BATF	chr15:34696116-34696523	GM12878	blood:	n/a	n/a
22	BATF	chr15:34662171-34662762	GM12878	blood:	n/a	chr15:34662522-34662532
23	BATF	chr15:34842337-34842744	GM12878	blood:	n/a	n/a
24	BATF	chr15:34695261-34695641	GM12878	blood:	n/a	n/a
25	BCL11A	chr15:34841554-34841859	GM12878	blood:	n/a	n/a
26	BCL11A	chr15:34695333-34695638	GM12878	blood:	n/a	n/a
27	BCL11A	chr15:34816077-34816245	GM12878	blood:	n/a	chr15:34816149-34816162
28	BCL11A	chr15:34842236-34842734	GM12878	blood:	n/a	n/a
29	BCL11A	chr15:34696015-34696513	GM12878	blood:	n/a	n/a
30	BCLAF1	chr15:34729008-34729495	GM12878	blood:	n/a	chr15:34729354-34729367 chr15:34729445-34729458
31	BCLAF1	chr15:34729841-34730371	GM12878	blood:	n/a	n/a
32	BCLAF1	chr15:34874945-34875255	GM12878	blood:	n/a	n/a
33	BHLHE40	chr15:34869080-34869387	K562	blood:	n/a	n/a
34	BHLHE40	chr15:34781166-34781584	K562	blood:	n/a	n/a
35	BHLHE40	chr15:34875059-34875165	K562	blood:	n/a	n/a
36	BHLHE40	chr15:34754120-34754185	K562	blood:	n/a	n/a
37	BHLHE40	chr15:34807981-34808415	GM12878	blood:	n/a	n/a
38	BHLHE40	chr15:34806954-34807627	HepG2	liver:	n/a	chr15:34807373-34807389
39	BHLHE40	chr15:34729075-34729345	K562	blood:	n/a	n/a
40	BHLHE40	chr15:34728512-34728697	K562	blood:	n/a	n/a
41	BHLHE40	chr15:34804947-34805071	K562	blood:	n/a	chr15:34805006-34805019 chr15:34805002-34805023
42	BHLHE40	chr15:34729879-34730508	K562	blood:	n/a	n/a
43	BHLHE40	chr15:34808048-34808404	K562	blood:	n/a	n/a
44	BHLHE40	chr15:34729886-34730498	GM12878	blood:	n/a	n/a
45	BHLHE40	chr15:34729903-34730377	HepG2	liver:	n/a	n/a
46	BHLHE40	chr15:34806536-34807767	K562	blood:	n/a	chr15:34807373-34807389 chr15:34806722-34806738
47	BHLHE40	chr15:34806518-34806718	GM12878	blood:	n/a	n/a
48	BHLHE40	chr15:34875060-34875257	GM12878	blood:	n/a	n/a
49	BHLHE40	chr15:34807389-34807610	GM12878	blood:	n/a	n/a
50	CBX3	chr15:34807187-34807674	K562	blood:	n/a	n/a

(count:2258 , 50 per page) page: 1 2 3 4 5 6 7 ... 46

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:34729310-34729360	NT2-D1	testis:	n/a
2	chr15:34729310-34729360	NT2-D1	testis:	n/a
3	chr15:34785380-34785430	Caco-2	colon:	n/a
4	chr15:34729310-34729360	GM06990	blood:	n/a
5	chr15:34806349-34806399	HL-60	blood:	n/a
6	chr15:34788017-34788067	NHDF-neo	bronchial:	n/a
7	chr15:34782167-34782217	BE2_C	brain:	n/a
8	chr15:34781705-34781755	HEK293	kidney:	embryo
9	chr15:34806592-34806642	AG10803	skin:	n/a
10	chr15:34787420-34787470	NHDF-neo	bronchial:	n/a
11	chr15:34807679-34807729	SAEC	small airway:	n/a
12	chr15:34727209-34727259	SK-N-MC	brain:	n/a
13	chr15:34807679-34807729	IMR90	lung:	fetal
14	chr15:34817982-34818032	SAEC	small airway:	n/a
15	chr15:34788017-34788067	GM19239	blood:	n/a
16	chr15:34729026-34729076	HPAEpiC	pulmonary alveolar:	n/a
17	chr15:34729115-34729165	NHDF-neo	bronchial:	n/a
18	chr15:34729026-34729076	HCPEpiC	choroid plexus:	n/a
19	chr15:34782820-34782870	HCF	heart:	n/a
20	chr15:34807221-34807271	NB4	blood:	n/a
21	chr15:34785380-34785430	GM12878	blood:	n/a
22	chr15:34787420-34787470	SK-N-SH_RA	brain:	n/a
23	chr15:34730071-34730121	HCM	heart:	n/a
24	chr15:34781705-34781755	HPAEpiC	pulmonary alveolar:	n/a
25	chr15:34671426-34671476	HAEpiC	amniotic membrane:	n/a
26	chr15:34729026-34729076	NHDF-neo	bronchial:	n/a
27	chr15:34875138-34875188	HRCEpiC	kidney:	n/a
28	chr15:34729115-34729165	HRE	kidney:	n/a
29	chr15:34874183-34874233	HCPEpiC	choroid plexus:	n/a
30	chr15:34874862-34874912	NHBE	bronchial:	n/a
31	chr15:34788017-34788067	SKMC	muscle:	n/a
32	chr15:34875117-34875167	GM06990	blood:	n/a
33	chr15:34791564-34791614	Jurkat	blood:	n/a
34	chr15:34806592-34806642	HepG2	liver:	n/a
35	chr15:34872733-34872783	HUVEC	blood vessel:	n/a
36	chr15:34781969-34782019	Hela-S3	cervix:	n/a
37	chr15:34781969-34782019	Caco-2	colon:	n/a
38	chr15:34806592-34806642	HRPEpiC	eye:	n/a
39	chr15:34875325-34875375	HCF	heart:	n/a
40	chr15:34727209-34727259	HepG2	liver:	n/a
41	chr15:34875138-34875188	HIPEpiC	eye:	n/a
42	chr15:34807050-34807100	ECC-1	luminal epithelium:	n/a
43	chr15:34729026-34729076	LNCaP	prostate:	n/a
44	chr15:34671426-34671476	K562	blood:	n/a
45	chr15:34729115-34729165	BJ	skin:	n/a
46	chr15:34781969-34782019	SK-N-MC	brain:	n/a
47	chr15:34875250-34875300	NH-A	brain:	n/a
48	chr15:34726650-34726700	HRPEpiC	eye:	n/a
49	chr15:34729310-34729360	H1-hESC	embryonic stem cell:	embryo
50	chr15:34874183-34874233	HRPEpiC	eye:	n/a

(count:49 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:34728587..34731061-chr15:34780506..34783189,2	K562	blood:
2	chr15:34728587..34731061-chr15:34780506..34783189,2	K562	blood:
3	chr15:34783968..34786265-chr15:34799018..34801586,2	K562	blood:
4	chr15:34729318..34730097-chr5:1799590..1800354,2	Hela-S3	cervix:
5	chr15:34869058..34871895-chr15:34873883..34875893,3	K562	blood:
6	chr15:34783968..34786265-chr15:34799018..34801586,2	K562	blood:
7	chr15:34770080..34772217-chr15:34772786..34775252,2	K562	blood:
8	chr15:34728531..34731203-chr15:34733693..34737649,5	K562	blood:
9	chr15:34870217..34872096-chr15:35279333..35281998,2	K562	blood:
10	chr15:34655711..34662054-chr15:34662110..34667087,9	K562	blood:
11	chr15:34726561..34729987-chr15:34871215..34874723,3	K562	blood:
12	chr15:34728066..34730668-chr15:34791069..34792682,2	K562	blood:
13	chr15:34769198..34772919-chr15:34774454..34777192,3	K562	blood:
14	chr15:34759701..34761289-chr15:34761464..34762969,2	K562	blood:
15	chr15:34761476..34764376-chr15:34768521..34770931,2	K562	blood:
16	chr15:34633931..34636680-chr15:34728775..34730381,2	K562	blood:
17	chr15:34659441..34662117-chr15:34875107..34877933,3	K562	blood:
18	chr15:34728131..34733225-chr15:34735717..34740218,7	K562	blood:
19	chr15:34790196..34793794-chr15:34794467..34797662,3	K562	blood:
20	chr15:34790196..34793794-chr15:34794467..34797662,3	K562	blood:
21	chr15:34790342..34793794-chr15:34793900..34797346,3	K562	blood:
22	chr15:34790342..34793794-chr15:34793900..34797346,3	K562	blood:
23	chr15:34628679..34631455-chr15:34874185..34875808,2	K562	blood:
24	chr15:34658082..34661057-chr15:34874863..34877414,3	MCF-7	breast:
25	chr15:34727581..34729084-chr15:34874171..34876472,2	MCF-7	breast:
26	chr15:34500776..34502841-chr15:34668848..34671428,2	K562	blood:
27	chr15:34662221..34663969-chr15:34664230..34666356,2	MCF-7	breast:
28	chr15:34728587..34731061-chr15:34780506..34783189,3	K562	blood:
29	chr15:34728587..34731061-chr15:34780506..34783189,3	K562	blood:
30	chr15:34727885..34731466-chr15:34878887..34881950,4	K562	blood:
31	chr15:34770080..34772217-chr15:34772786..34775252,2	K562	blood:
32	chr15:34761476..34764376-chr15:34768521..34770931,2	K562	blood:
33	chr15:34727095..34731466-chr15:34878887..34881950,4	K562	blood:
34	chr15:34759701..34761289-chr15:34761464..34762969,2	K562	blood:
35	chr15:34873722..34878608-chr15:34878671..34882990,11	K562	blood:
36	chr15:34726561..34729987-chr15:34871215..34874723,3	K562	blood:
37	chr15:34762215..34765168-chr15:34878877..34880750,2	K562	blood:
38	chr15:34774551..34776237-chr15:34779411..34782082,2	K562	blood:
39	chr15:34658214..34660711-chr15:34806608..34809602,2	K562	blood:
40	chr15:34769198..34772919-chr15:34774454..34777192,3	K562	blood:
41	chr15:34867657..34871070-chr15:34876144..34878325,3	K562	blood:
42	chr15:34786054..34786721-chr7:5632299..5632821,2	HCT-116	colon:
43	chr15:34654880..34657124-chr15:34662673..34664645,2	MCF-7	breast:
44	chr15:34786049..34786720-chr7:5632277..5632906,2	NB4	blood:
45	chr15:34868472..34871070-chr15:34876144..34878325,2	K562	blood:
46	chr15:34720616..34722466-chr15:34725764..34728714,2	K562	blood:
47	chr15:34727667..34729400-chr15:34875206..34876777,2	K562	blood:
48	chr15:34774551..34776237-chr15:34779411..34782082,2	K562	blood:
49	chr15:34659866..34661509-chr15:34661998..34663782,2	K562	blood:

(count:14 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-GJD2-3	chr15:34874951-34875061	NONHSAT041597
2	lnc-GJD2-4	chr15:34845946-34846157	NONHSAT140232
3	lnc-GJD2-3	chr15:34858091-34858674	NONHSAT041597
4	lnc-GJD2-4	chr15:34867026-34867115	NONHSAT041596
5	lnc-LPCAT4-1	chr15:34720816-34721126	NONHSAT041586
6	lnc-GJD2-4	chr15:34845174-34845292	NONHSAT041596
7	lnc-GJD2-4	chr15:34843392-34843477	NONHSAT140232
8	lnc-GJD2-4	chr15:34845946-34846157	NONHSAT041596
9	lnc-GOLGA8B-1	chr15:34752685-34752950	uc_384_-
10	lnc-LPCAT4-1	chr15:34698878-34699071	NONHSAT041586
11	lnc-C15orf55-4	chr15:34752685-34752950	uc_384_+
12	lnc-LPCAT4-1	chr15:34699777-34699936	NONHSAT041586
13	lnc-GJD2-4	chr15:34845096-34845292	NONHSAT140232
14	lnc-GJD2-4	chr15:34873667-34873700	NONHSAT140232

miRNA name	Chromosome Location	mirBase accession
hsa-miR-1233-3p	chr15:34820491-34820510	MIMAT0005588_1
hsa-miR-1233-3p	chr15:34674270-34674289	MIMAT0005588
hsa-miR-1233-5p	chr15:34820548-34820569	MIMAT0022943_1
hsa-miR-1233-5p	chr15:34674327-34674348	MIMAT0022943

(count:2 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	GOLGA8B	hsa-miR-15a-5p	chr15:34817527-34817548
2	GOLGA8B	hsa-miR-32-5p	chr15:34818291-34818311

Variant related genes	Relation type
MIR1233-1	TF binding region
LPCAT4	TF binding region
ENSG00000261081	TF binding region
ENSG00000261559	TF binding region
MIR1233-2	TF binding region
ENSG00000259892	TF binding region
ENSG00000260639	TF binding region
ENSG00000259904	TF binding region
GOLGA8A	TF binding region
HNRNPLP2	TF binding region
GOLGA8B	TF binding region
ENSG00000266205	TF binding region
MIR1233-1	CpG island
LPCAT4	CpG island
ENSG00000261081	CpG island
ENSG00000261559	CpG island
MIR1233-2	CpG island
ENSG00000259892	CpG island
ENSG00000260639	CpG island
ENSG00000259904	CpG island
GOLGA8A	CpG island
HNRNPLP2	CpG island
GOLGA8B	CpG island
ENSG00000266205	CpG island
ENSG00000134152	chromatin interactions
ENSG00000175265	chromatin interactions
ENSG00000215252	chromatin interactions
ENSG00000259917	chromatin interactions
ENSG00000182117	chromatin interactions
ENSG00000198146	chromatin interactions
ENSG00000140199	chromatin interactions
ENSG00000075618	chromatin interactions
ENSG00000171421	chromatin interactions
ENSG00000176454	chromatin interactions
ENSG00000184507	chromatin interactions
ENSG00000266205	chromatin interactions

Extended variants
information (count: 6054 )
Associated
traits (count: 68 )

Variant overlapped rSNPs/rCNVs (count:6054 , 50 per page) page: 1 2 3 4 5 6 7 ... 122

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7166986	chr15:34662849-34662850	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs551582974	chr15:34662922-34662923	Weak transcription Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
3	rs369981169	chr15:34663021-34663022	Weak transcription Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
4	rs139025161	chr15:34663068-34663069	Weak transcription Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
5	rs552710720	chr15:34663083-34663084	Weak transcription Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
6	rs376883183	chr15:34663088-34663089	Weak transcription Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
7	rs376343317	chr15:34663092-34663093	Weak transcription Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
8	rs375492439	chr15:34663093-34663094	Weak transcription Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
9	rs114339479	chr15:34663137-34663138	Weak transcription Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
10	rs552002254	chr15:34663148-34663149	Weak transcription Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
11	rs111207261	chr15:34663155-34663156	Weak transcription Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
12	rs530899822	chr15:34663157-34663158	Weak transcription Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
13	rs539243845	chr15:34663210-34663211	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
14	rs549143136	chr15:34663212-34663213	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
15	rs168336	chr15:34663213-34663214	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
16	rs150898504	chr15:34663244-34663245	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
17	rs12906264	chr15:34663245-34663246	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
18	rs12906266	chr15:34663251-34663252	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
19	rs199849475	chr15:34663254-34663255	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
20	rs201612428	chr15:34663281-34663282	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
21	rs535166137	chr15:34663288-34663289	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
22	rs146124820	chr15:34663291-34663292	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
23	rs186639175	chr15:34663298-34663299	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
24	rs553514222	chr15:34663302-34663303	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
25	rs367832384	chr15:34663310-34663311	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
26	rs200927091	chr15:34663317-34663318	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
27	rs201805326	chr15:34663328-34663329	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
28	rs113041249	chr15:34663340-34663341	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
29	rs539279160	chr15:34663368-34663369	Weak transcription Flanking Bivalent TSS/Enh Active TSS Enhancers	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
30	rs146708307	chr15:34663407-34663408	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
31	rs372044051	chr15:34663408-34663409	Weak transcription	TF binding region Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
32	rs112042328	chr15:34663411-34663412	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
33	rs189912090	chr15:34663432-34663433	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
34	rs116951493	chr15:34663433-34663434	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
35	rs112392174	chr15:34663449-34663450	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
36	rs541884156	chr15:34663466-34663467	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
37	rs571188773	chr15:34663484-34663485	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
38	rs144788071	chr15:34663486-34663487	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
39	rs562454075	chr15:34663507-34663508	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
40	rs113110060	chr15:34663521-34663522	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
41	rs113675561	chr15:34663570-34663571	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
42	rs140310054	chr15:34663574-34663575	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
43	rs145328277	chr15:34663575-34663576	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
44	rs563991841	chr15:34663595-34663596	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
45	rs531155475	chr15:34663624-34663625	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
46	rs10451002	chr15:34663715-34663716	Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs10450965	chr15:34663720-34663721	Weak transcription	Chromatin interactive region	2 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs528499494	chr15:34663736-34663737	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
49	rs374483516	chr15:34663811-34663812	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a
50	rs115109901	chr15:34663821-34663822	Weak transcription	Chromatin interactive region	2 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:68)

Disease	PMID	Source
HDAC8	0	CNVD
NIPBL	0	CNVD
RAD21	0	CNVD
SMC1A	0	CNVD
SMC3	0	CNVD
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Angelman syndrome	16183798	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
Hodgkin''s lymphoma	17606441	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Breast cancer	17133270	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21858162	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21785460	CNVD
Abnormal corpus callosum	21572526	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Autism	19204725	CNVD
Schizophrenia	19204725	CNVD
Schizophrenia	19149910	CNVD
Ovarian cancer	22174824	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Legius syndrome	19443465	CNVD
Holoprosencephaly	21359414	CNVD
Myelofibrosis	22110671	CNVD
Glioblastoma multiforme	22286061	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Prader-willi syndrome	21504564	CNVD
Cancer	17440070	CNVD
Basal cell lymphoma	17053054	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD

Chromatin state (count:1891 , 50 per page) page: 1 2 3 4 5 6 7 ... 38

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34660400-34668600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:34660600-34662800	Enhancers	Primary B cells from peripheral blood	blood
3	chr15:34660600-34666600	Weak transcription	Right Atrium	heart
4	chr15:34660600-34668000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr15:34660800-34662800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr15:34660800-34663800	Weak transcription	Brain Cingulate Gyrus	brain
7	chr15:34660800-34665800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:34660800-34665800	Weak transcription	Fetal Muscle Trunk	muscle
9	chr15:34660800-34666000	Weak transcription	Esophagus	oesophagus
10	chr15:34660800-34674200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr15:34660800-34674400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:34660800-34674400	Weak transcription	Fetal Lung	lung
13	chr15:34660800-34674800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr15:34661000-34664600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
15	chr15:34661000-34665800	Weak transcription	Gastric	stomach
16	chr15:34661000-34665800	Weak transcription	Lung	lung
17	chr15:34661000-34671800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr15:34661000-34673800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr15:34661000-34678000	Weak transcription	Primary T cells from cord blood	blood
20	chr15:34661200-34679600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr15:34661200-34680800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr15:34661400-34672800	Weak transcription	Primary T cells fromperipheralblood	blood
23	chr15:34661600-34674600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr15:34662000-34663400	Enhancers	HSMM	muscle
25	chr15:34662400-34662800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr15:34662400-34663000	Enhancers	GM12878-XiMat	blood
27	chr15:34662600-34662800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr15:34662600-34662800	Enhancers	A549	lung
29	chr15:34662600-34675400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
30	chr15:34662800-34663000	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr15:34662800-34667400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr15:34662800-34723600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr15:34663000-34663400	Active TSS	Breast Myoepithelial Primary Cells	Breast
34	chr15:34663000-34674800	Weak transcription	GM12878-XiMat	blood
35	chr15:34663200-34663400	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
36	chr15:34663400-34674600	Weak transcription	HSMM	muscle
37	chr15:34664600-34664800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr15:34664600-34666000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr15:34664800-34665200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr15:34665200-34665400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr15:34665400-34675200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr15:34665800-34666000	Enhancers	Fetal Muscle Trunk	muscle
43	chr15:34665800-34666200	Enhancers	Lung	lung
44	chr15:34665800-34666600	Enhancers	Gastric	stomach
45	chr15:34665800-34666800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr15:34666000-34666600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr15:34666000-34667000	Enhancers	Esophagus	oesophagus
48	chr15:34666000-34674600	Weak transcription	Fetal Muscle Trunk	muscle
49	chr15:34666200-34666400	Weak transcription	Lung	lung
50	chr15:34666200-34666600	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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