Variant report

Variant	esv16742
Chromosome Location	chr15:50086726-50091324
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:50090867..50093213-chr15:50102462..50104397,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DTWD1-3	chr15:50086443-50088294	NONHSAT042390

Extended variants
information (count: 98 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:98 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs551351353	chr15:50086726-50086727	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
2	rs560403818	chr15:50086777-50086778	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
3	rs528426871	chr15:50086780-50086781	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
4	rs541942275	chr15:50086836-50086837	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
5	rs139864467	chr15:50086875-50086876	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
6	rs568205540	chr15:50086912-50086913	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
7	rs112226359	chr15:50086937-50086938	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
8	rs535587624	chr15:50086940-50086941	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
9	rs200656654	chr15:50087001-50087002	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
10	rs569322586	chr15:50087089-50087090	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
11	rs184172760	chr15:50087093-50087094	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
12	rs368972559	chr15:50087134-50087135	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
13	rs112957626	chr15:50087168-50087169	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
14	rs567200852	chr15:50087237-50087238	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
15	rs530638837	chr15:50087275-50087276	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
16	rs533761769	chr15:50087284-50087285	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
17	rs113449729	chr15:50087294-50087295	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
18	rs573760844	chr15:50087327-50087328	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
19	rs112430529	chr15:50087352-50087353	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
20	rs556241407	chr15:50087355-50087356	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
21	rs550060617	chr15:50087358-50087359	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
22	rs571831950	chr15:50087415-50087416	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
23	rs560181820	chr15:50087418-50087419	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
24	rs189536563	chr15:50087425-50087426	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
25	rs540217003	chr15:50087438-50087439	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
26	rs561774108	chr15:50087444-50087445	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
27	rs531018122	chr15:50087449-50087450	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
28	rs9745170	chr15:50087455-50087456	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs550624670	chr15:50087463-50087464	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
30	rs567632377	chr15:50087478-50087479	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
31	rs370700587	chr15:50087493-50087494	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
32	rs569339243	chr15:50087516-50087517	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
33	rs16973791	chr15:50087535-50087536	Inactive region	lncRNA	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
34	rs74014160	chr15:50087543-50087544	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
35	rs185495478	chr15:50087581-50087582	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
36	rs534528286	chr15:50087618-50087619	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
37	rs556118939	chr15:50087652-50087653	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
38	rs567238933	chr15:50087653-50087654	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
39	rs537847466	chr15:50087733-50087734	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
40	rs375120014	chr15:50087734-50087735	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
41	rs190449444	chr15:50087748-50087749	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
42	rs547715976	chr15:50087765-50087766	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
43	rs112027028	chr15:50087779-50087780	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
44	rs12916290	chr15:50087804-50087805	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
45	rs2660965	chr15:50087827-50087828	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
46	rs199586514	chr15:50087831-50087832	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
47	rs151303559	chr15:50087833-50087834	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
48	rs544863640	chr15:50087835-50087836	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
49	rs553967238	chr15:50087863-50087864	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a
50	rs371256971	chr15:50087864-50087865	Inactive region	lncRNA	n/a	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Ewing''s sarcoma	21437220	CNVD
Schizophrenia	19415332	CNVD
Breast cancer	22522925	CNVD
Autism	22495311	CNVD
Wilms tumour	21544195	CNVD
Testicular germ cell tumor	18059402	CNVD
cataract	16735990	CNVD
Cancer	21637783	CNVD
Colorectal cancer	20709793	CNVD
Medulloblastoma	21979893	CNVD
spastic paraplegia with thinning of corpus callosum	19105190	CNVD
Schizophrenia	21324950	CNVD
Astrocytoma	17387387	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Disease	21824424	CNVD
Melanoma	18172304	CNVD
Colorectal cancer	16774939	CNVD
Gastric cancer	17167181	CNVD
Neuroblastoma	19435921	CNVD
Colorectal cancer	19359472	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Colorectal cancer	16272173	CNVD
Gastrointestinal stromal cancer	20470368	CNVD
Multiple myeloma	17550852	CNVD
Intellectual disability	22102821	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Multiple myeloma	20724749	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Breast cancer	21785460	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Prostate cancer	18632612	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Basal cell lymphoma	17053054	CNVD
Breast cancer	22032731	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Hirschsprung''s Disease	21712996	CNVD
Myeloproliferative neoplasm	20015882	CNVD
Cancer	21129771	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Abnormal phenotypes	18644119	CNVD
Cancer	16751803	CNVD
Esophageal adenocarcinoma	18820669	CNVD
Myelofibrosis	22110671	CNVD
Gastrointestinal stromal cancer	20818650	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50090200-50091000	Enhancers	Ovary	ovary

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