Variant report

Variant	esv16786
Chromosome Location	chr7:63828574-63836671
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:1)
LncRNA
region (count:7)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:63810767..63813446-chr7:63828000..63830208,2	K562	blood:

(count:7 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF736-2	chr7:63834825-63834944	XLOC_006124
2	lnc-ZNF736-1	chr7:63832408-63832491	XLOC_006123
3	lnc-ZNF736-1	chr7:63832408-63832491	XLOC_006123
4	lnc-ZNF736-1	chr7:63834945-63835338	XLOC_006123
5	lnc-ZNF736-1	chr7:63832148-63832189	XLOC_006123
6	lnc-ZNF736-1	chr7:63834945-63835338	XLOC_006123
7	lnc-ZNF736-1	chr7:63831907-63831978	XLOC_006123

No data

Variant related genes	Relation type
RAB5C	miRNA target sites
CDX2	miRNA target sites
CDV3	miRNA target sites

Extended variants
information (count: 221 )
Associated
traits (count: 75 )

Variant overlapped rSNPs/rCNVs (count:221 , 50 per page) page: 1 2 3 4 5

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs550035264	chr7:63828607-63828608	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs557148033	chr7:63828617-63828618	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs377627659	chr7:63828662-63828663	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs192228639	chr7:63828684-63828685	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs13243255	chr7:63828769-63828770	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
6	rs149892283	chr7:63828785-63828786	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs573195254	chr7:63828801-63828802	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs545458124	chr7:63828900-63828901	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs144958599	chr7:63828988-63828989	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs531257895	chr7:63829007-63829008	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs544902696	chr7:63829052-63829053	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs561546983	chr7:63829068-63829069	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs530204503	chr7:63829097-63829098	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs140883833	chr7:63829099-63829100	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs184429794	chr7:63829110-63829111	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs528165962	chr7:63829126-63829127	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs551010586	chr7:63829142-63829143	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs570889953	chr7:63829156-63829157	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs373006613	chr7:63829208-63829209	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs188692863	chr7:63829213-63829214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs567478501	chr7:63829234-63829235	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs536015375	chr7:63829237-63829238	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs552490634	chr7:63829265-63829266	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs553443535	chr7:63829278-63829279	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs147463670	chr7:63829282-63829283	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs71060593	chr7:63829285-63829286	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs113464963	chr7:63829286-63829287	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs75188728	chr7:63829299-63829300	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs59280577	chr7:63829301-63829302	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs116821855	chr7:63829334-63829335	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs377564430	chr7:63829425-63829426	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs545494897	chr7:63829500-63829501	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs78351487	chr7:63829575-63829576	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs575671804	chr7:63829576-63829577	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs544911765	chr7:63829635-63829636	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs141901918	chr7:63829647-63829648	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs181119782	chr7:63829652-63829653	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs12671586	chr7:63829689-63829690	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
39	rs147116621	chr7:63829755-63829756	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs669901	chr7:63829756-63829757	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
41	rs112243822	chr7:63829814-63829815	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs564557444	chr7:63829869-63829870	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs559931682	chr7:63829883-63829884	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs377548356	chr7:63829885-63829886	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs140949925	chr7:63829937-63829938	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs687484	chr7:63829969-63829970	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
47	rs186491301	chr7:63829970-63829971	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs73137633	chr7:63829982-63829983	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
49	rs566653166	chr7:63830026-63830027	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs73368064	chr7:63830029-63830030	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:75)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Follicular lymphoma	20505157	CNVD
Biliary cancer	19435499	CNVD
Williams-beuren syndrome	22470819	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Glioblastoma	21080181	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Astrocytoma	22246337	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
Acute monocytic leukemia	16498392	CNVD
Prostate cancer	16461572	CNVD
Salivary gland tumor	18059337	CNVD
Multiple myeloma	17550852	CNVD
Acute myeloid leukemia	21251322	CNVD
small cell lung cancer	20016488	CNVD
Bladder cancer	21909424	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:63828600-63834600	Weak transcription	Fetal Heart	heart
2	chr7:63830000-63830200	ZNF genes & repeats	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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