Variant report

Variant	esv16853
Chromosome Location	chr4:8622050-8638959
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:8472717..8474725-chr4:8621251..8624026,2	K562	blood:

Extended variants
information (count: 52 )
Associated
traits (count: 56 )

Variant overlapped rSNPs/rCNVs (count:52 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs542836466	chr4:8622054-8622055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs554453273	chr4:8622056-8622057	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs576444712	chr4:8622065-8622066	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs543736543	chr4:8622080-8622081	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs565128908	chr4:8622081-8622082	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs34581598	chr4:8622086-8622087	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs12511560	chr4:8622158-8622159	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs377551428	chr4:8622174-8622175	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs540632487	chr4:8622180-8622181	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs12499267	chr4:8622218-8622219	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs12499290	chr4:8622243-8622244	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs548795759	chr4:8622262-8622263	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs367586962	chr4:8622286-8622287	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs139874745	chr4:8622301-8622302	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs143256210	chr4:8622302-8622303	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs570778638	chr4:8622338-8622339	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs529506227	chr4:8622362-8622363	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs535039684	chr4:8622365-8622366	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs553070632	chr4:8622436-8622437	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs146734168	chr4:8622454-8622455	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs62288594	chr4:8622519-8622520	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs201739710	chr4:8622539-8622540	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs62288595	chr4:8622617-8622618	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs150386213	chr4:8622632-8622633	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs367969620	chr4:8622636-8622637	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs142696044	chr4:8622700-8622701	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs372566073	chr4:8622759-8622760	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs200815487	chr4:8622842-8622843	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs535569040	chr4:8622907-8622908	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs554849971	chr4:8622926-8622927	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs576305484	chr4:8622946-8622947	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs550385787	chr4:8622971-8622972	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs4696705	chr4:8622979-8622980	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs543601375	chr4:8622982-8622983	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs140525766	chr4:8622990-8622991	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs577179173	chr4:8622993-8622994	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs184773007	chr4:8623003-8623004	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs559068776	chr4:8623023-8623024	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs529835479	chr4:8623056-8623057	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs200136898	chr4:8623106-8623107	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs541566705	chr4:8623110-8623111	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs368904398	chr4:8623126-8623127	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs116834080	chr4:8623160-8623161	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs531027229	chr4:8623166-8623167	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs188752945	chr4:8623167-8623168	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs564468337	chr4:8623233-8623234	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs199942359	chr4:8623292-8623293	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs368813958	chr4:8623313-8623314	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs200973094	chr4:8623601-8623602	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs143192781	chr4:8623620-8623621	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:56)

Disease	PMID	Source
Melanoma	20688739	CNVD
Wilms tumour	21544195	CNVD
Colorectal cancer	16272173	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17603634	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	17533364	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Cancer	21637783	CNVD
Melanoma	21693616	CNVD
Squamous cell cancer	21044232	CNVD
Colorectal cancer	20709793	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Non-small cell lung cancer	21044232	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	17387387	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Cervical cancer	21062161	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Neuroblastoma	18923191	CNVD
small cell lung cancer	20016488	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Prostate cancer	18632612	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21785460	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Breast cancer	21509527	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Schizophrenia	22241247	CNVD
Autosomal-dominant microtia	18179897	CNVD
Glioma	17123091	CNVD
Colorectal cancer	20459617	CNVD
Breast cancer	17133270	CNVD
Sezary syndrome	18413736	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
Schizophrenia	21346763	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:8596000-8622800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr4:8596000-8623200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr4:8611800-8622800	Weak transcription	Spleen	Spleen
4	chr4:8613000-8623000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr4:8613800-8623000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:8616200-8623200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr4:8616600-8623000	Weak transcription	Osteobl	bone
8	chr4:8617800-8622400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr4:8617800-8623200	Weak transcription	HSMMtube	muscle
10	chr4:8619000-8623600	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr4:8621400-8623200	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr4:8621800-8623400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr4:8621800-8623400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr4:8622000-8623600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr4:8622000-8623600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr4:8622000-8623800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr4:8622000-8623800	Weak transcription	Placenta	Placenta
18	chr4:8622000-8623800	Weak transcription	Ovary	ovary
19	chr4:8622000-8623800	Weak transcription	Placenta Amnion	Placenta Amnion

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links