Variant report
| Variant | esv1686486 |
|---|---|
| Chromosome Location | chr10:21615107-21615341 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs375306698 | chr10:21615119-21615120 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs375350095 | chr10:21615127-21615128 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs572641051 | chr10:21615136-21615137 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs369066090 | chr10:21615142-21615143 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs367647428 | chr10:21615148-21615149 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs372604501 | chr10:21615153-21615154 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs192358689 | chr10:21615157-21615158 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs371816003 | chr10:21615163-21615164 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs377224652 | chr10:21615189-21615190 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs554128714 | chr10:21615234-21615235 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs532026431 | chr10:21615270-21615271 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs532505496 | chr10:21615301-21615302 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 13 | rs377235933 | chr10:21615328-21615329 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 14 | rs574373893 | chr10:21615330-21615331 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 15 | rs540317939 | chr10:21615339-21615340 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 16 | rs553623221 | chr10:21615341-21615342 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:35)
| Disease | PMID | Source |
|---|---|---|
| Breast cancer | 17133270 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Phyllodes tumor | 17334353 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Chordoma | 21602918 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Melanoma | 18172304 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Acute lymphoblastic leukemia | 20724749 | CNVD |
| Autism | 22495311 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Intracranial aneurysm | 16715129 | CNVD |
| Multiple myeloma | 16616336 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Olfactory neuroblastoma | 18408657 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Glioblastoma multiforme | 21525872 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:21607800-21615800 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
| 2 | chr10:21608000-21619000 | Weak transcription | Lung | lung |
| 3 | chr10:21608800-21615800 | Weak transcription | A549 | lung |
| 4 | chr10:21612800-21616000 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
