Variant report

Variant	esv16908
Chromosome Location	chr7:64556979-64564810
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF273-7	chr7:64563733-64563817	NONHSAT121075

Extended variants
information (count: 447 )
Associated
traits (count: 81 )

Variant overlapped rSNPs/rCNVs (count:447 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs201809650	chr7:64556982-64556983	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs138722543	chr7:64556992-64556993	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs199895966	chr7:64557020-64557021	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs191703491	chr7:64557022-64557023	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs147063541	chr7:64557051-64557052	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs368546518	chr7:64557052-64557053	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs374277046	chr7:64557057-64557058	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs77085078	chr7:64557068-64557069	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs536594006	chr7:64557096-64557097	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs73369154	chr7:64557137-64557138	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs573150381	chr7:64557156-64557157	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs73369156	chr7:64557165-64557166	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs117669503	chr7:64557194-64557195	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs538671694	chr7:64557206-64557207	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs112390117	chr7:64557261-64557262	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs62454967	chr7:64557284-64557285	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs114212499	chr7:64557285-64557286	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs142833993	chr7:64557299-64557300	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs74676178	chr7:64557315-64557316	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs563513930	chr7:64557316-64557317	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs564684921	chr7:64557317-64557318	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs542898588	chr7:64557323-64557324	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs559696951	chr7:64557346-64557347	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs73369157	chr7:64557349-64557350	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs183922121	chr7:64557366-64557367	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs188254372	chr7:64557371-64557372	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs552305254	chr7:64557381-64557382	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs114779528	chr7:64557389-64557390	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs1709470	chr7:64557394-64557395	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
30	rs201141745	chr7:64557416-64557417	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs199624253	chr7:64557421-64557422	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs534653846	chr7:64557438-64557439	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs530555466	chr7:64557480-64557481	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs111575859	chr7:64557557-64557558	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs200583002	chr7:64557565-64557566	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs201878128	chr7:64557575-64557576	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs76491304	chr7:64557599-64557600	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs550754992	chr7:64557623-64557624	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs547863716	chr7:64557659-64557660	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs567473415	chr7:64557665-64557666	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs193300985	chr7:64557704-64557705	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs73369158	chr7:64557707-64557708	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs567073543	chr7:64557708-64557709	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs538999481	chr7:64557713-64557714	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs568374086	chr7:64557743-64557744	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs536969650	chr7:64557749-64557750	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs202041300	chr7:64557797-64557798	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs75185615	chr7:64557820-64557821	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs538387465	chr7:64557833-64557834	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs555105840	chr7:64557834-64557835	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:81)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17170743	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Thyroid cancer	19087340	CNVD
Seminomas	18059402	CNVD
Testicular cancer	18059402	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Autism	19415332	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
T-cell lymphomas	19863542	CNVD
Malaria	21533027	CNVD
Melanoma	18172304	CNVD
Renal cell carcinoma	19461508	CNVD
head and neck squamous cell carcinoma	19289630	CNVD
Stenocardia	21860640	CNVD
Vasospasm	21860640	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Ewing''s sarcoma	17952124	CNVD
Autism	22495311	CNVD
Follicular lymphoma	20505157	CNVD
Biliary cancer	19435499	CNVD
Williams-beuren syndrome	22470819	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Multiple myeloma	16461302	CNVD
Glioblastoma multiforme	21750150	CNVD
Cancer	21183584	CNVD
Hepatocellular carcinoma	16750200	CNVD
Non-small cell lung cancer	21829676	CNVD
Gastric cancer	24379144	CNVD
Glioblastoma multiforme	17002787	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Lissencephaly	21572526	CNVD
Breast cancer	17603634	CNVD
Liposarcoma	21253554	CNVD
Breast cancer	16397240	CNVD
Acute myeloid leukemia	16864856	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Squamous cell cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Glioblastoma multiforme	17387387	CNVD
Low-grade fibromyxoid sarcoma	0	CNVD
Oligodendroglial tumors	17285580	CNVD
Endometrial cancer	22040021	CNVD
Burkitt''s lymphoma	18698080	CNVD
Breast cancer	21264507	CNVD
Shwachman-Diamond syndrome	22934832	CNVD
Glioblastoma	21080181	CNVD
Colorectal cancer	19359472	CNVD
Cutaneous malignant melanoma	17690212	CNVD
Leukemia	17361228	CNVD
Breast cancer	16461572	CNVD
Peripheral t-cell lymphoma	19118030	CNVD
Malignant melanoma	17690212	CNVD
Breast cancer	21990379	CNVD
Myelofibrosis	22110671	CNVD
Schizophrenia	21399695	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Astrocytoma	22246337	CNVD
Renal cell carcinoma	18592004	CNVD
Acute promyelocytic leukemia	19109227	CNVD
Lung cancer	18438408	CNVD
Breast cancer	21364760	CNVD
Acute monocytic leukemia	16498392	CNVD
Prostate cancer	16461572	CNVD
Salivary gland tumor	18059337	CNVD
Multiple myeloma	17550852	CNVD
Acute myeloid leukemia	21251322	CNVD
small cell lung cancer	20016488	CNVD
Bladder cancer	21909424	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
small cell lung cancer	17426248	CNVD
Cognitive impairment	21505072	CNVD
Schizophrenia	20967226	CNVD
Cancer	21272361	CNVD
Hodgkin''s lymphoma	17606441	CNVD
early-passage human iPS cells	21368824	CNVD

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:64541600-64557200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:64541600-64561200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:64542000-64562200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr7:64542000-64563200	Weak transcription	Left Ventricle	heart
5	chr7:64542000-64571000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:64542200-64557200	Weak transcription	Esophagus	oesophagus
7	chr7:64542200-64558400	Weak transcription	Fetal Intestine Large	intestine
8	chr7:64542200-64559000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:64542200-64560600	Weak transcription	Aorta	Aorta
10	chr7:64542200-64561400	Weak transcription	Liver	Liver
11	chr7:64542200-64561400	Weak transcription	Fetal Muscle Leg	muscle
12	chr7:64542200-64561600	Weak transcription	Pancreas	Pancrea
13	chr7:64542200-64563800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr7:64542200-64567000	Weak transcription	Right Ventricle	heart
15	chr7:64542200-64568200	Weak transcription	Adipose Nuclei	Adipose
16	chr7:64542400-64558600	Weak transcription	Right Atrium	heart
17	chr7:64542400-64558800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr7:64542400-64559800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:64542400-64560600	Weak transcription	Placenta	Placenta
20	chr7:64542400-64561000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr7:64542400-64562600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr7:64542400-64562800	Weak transcription	K562	blood
23	chr7:64542400-64565400	Weak transcription	Fetal Brain Female	brain
24	chr7:64542400-64565600	Weak transcription	HSMMtube	muscle
25	chr7:64542400-64573400	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr7:64546600-64558600	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr7:64549600-64564600	Weak transcription	Brain Cingulate Gyrus	brain
28	chr7:64550400-64566800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr7:64553200-64557400	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr7:64553200-64557400	Weak transcription	Duodenum Mucosa	Duodenum
31	chr7:64553200-64557400	Weak transcription	Rectal Mucosa Donor 31	rectum
32	chr7:64553600-64561000	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr7:64553600-64567200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr7:64553800-64558800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr7:64553800-64561000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr7:64553800-64564800	Weak transcription	Ovary	ovary
37	chr7:64554400-64560800	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr7:64557200-64557400	ZNF genes & repeats	Esophagus	oesophagus
39	chr7:64557200-64557400	Enhancers	Sigmoid Colon	Sigmoid Colon
40	chr7:64559800-64560000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr7:64561000-64562000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr7:64561600-64561800	Enhancers	Pancreas	Pancrea
43	chr7:64562000-64568200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr7:64563800-64564000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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