Variant report
| Variant | esv1732442 |
|---|---|
| Chromosome Location | chr10:21614940-21615101 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs535760580 | chr10:21614960-21614961 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs74198341 | chr10:21614972-21614973 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 3 | rs74202576 | chr10:21614998-21614999 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 4 | rs12782382 | chr10:21615001-21615002 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 5 | rs367893700 | chr10:21615008-21615009 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 6 | rs74214354 | chr10:21615009-21615010 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 7 | rs371767353 | chr10:21615011-21615012 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 8 | rs12782406 | chr10:21615041-21615042 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 9 | rs187854678 | chr10:21615066-21615067 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 10 | rs12360010 | chr10:21615081-21615082 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 11 | rs36130967 | chr10:21615082-21615083 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
| 12 | rs12360369 | chr10:21615088-21615089 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:35)
| Disease | PMID | Source |
|---|---|---|
| Breast cancer | 17133270 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Phyllodes tumor | 17334353 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Pancreatic endocrine tumor | 17639061 | CNVD |
| Gastric cancer | 17908304 | CNVD |
| Chordoma | 21602918 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Melanoma | 18172304 | CNVD |
| Pleomorphic xanthoastrocytoma | 20730472 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Thoracic aortic aneurysm | 21092924 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Oral cancer | 21386901 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Acute lymphoblastic leukemia | 20724749 | CNVD |
| Autism | 22495311 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Intracranial aneurysm | 16715129 | CNVD |
| Multiple myeloma | 16616336 | CNVD |
| T-cell lymphomas | 19863542 | CNVD |
| Esophageal cancer | 21851588 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Olfactory neuroblastoma | 18408657 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Glioblastoma multiforme | 21525872 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr10:21607800-21615800 | Weak transcription | iPS-18 Cell Line | embryonic stem cell |
| 2 | chr10:21608000-21619000 | Weak transcription | Lung | lung |
| 3 | chr10:21608800-21615800 | Weak transcription | A549 | lung |
| 4 | chr10:21612800-21616000 | Weak transcription | iPS-15b Cell Line | embryonic stem cell |
