Variant report
| Variant | esv1733641 |
|---|---|
| Chromosome Location | chr16:77694675-77694677 |
| allele | n/a |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:9)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:9 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr16:77471519..77472123-chr16:77694084..77694927,2 | MCF-7 | breast: | |
| 2 | chr16:77633402..77634464-chr16:77694120..77694942,5 | MCF-7 | breast: | |
| 3 | chr16:77633435..77634605-chr16:77694012..77694839,5 | MCF-7 | breast: | |
| 4 | chr16:77269675..77270630-chr16:77694031..77695259,6 | MCF-7 | breast: | |
| 5 | chr16:77690515..77693261-chr16:77693714..77695891,2 | MCF-7 | breast: | |
| 6 | chr16:77618368..77620113-chr16:77693748..77695802,3 | MCF-7 | breast: | |
| 7 | chr16:77635496..77637078-chr16:77692584..77695070,3 | MCF-7 | breast: | |
| 8 | chr16:77269587..77270650-chr16:77693914..77694941,6 | MCF-7 | breast: | |
| 9 | chr16:77686332..77688882-chr16:77693068..77695679,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | rs67811070 | chr16:77694675-77694676 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
| 2 | rs35929804 | chr16:77694676-77694677 | Enhancers | n/a | n/a | Overlapped CNVs | n/a |
Variant related diseases (count:72)
| Disease | PMID | Source |
|---|---|---|
| Esophageal squamous carcinoma | 21637470 | CNVD |
| Glioblastoma multiforme | 21080181 | CNVD |
| Acute lymphoblastic leukemia | 17690704 | CNVD |
| Autism | 19415332 | CNVD |
| Medulloblastoma | 21979893 | CNVD |
| Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
| Schizophrenia | 22958593 | CNVD |
| Breast cancer | 20668451 | CNVD |
| Cancer | 20668451 | CNVD |
| Lung cancer | 20668451 | CNVD |
| Ovarian cancer | 20668451 | CNVD |
| Pancreas cancer | 20668451 | CNVD |
| Prostate cancer | 20668451 | CNVD |
| Hodgkin''s lymphoma | 17606441 | CNVD |
| Autism | 22495311 | CNVD |
| Wilms tumour | 21544195 | CNVD |
| Prostate cancer | 18632612 | CNVD |
| T-cell prolymphocytic leukemia | 19278963 | CNVD |
| Breast cancer | 17850661 | CNVD |
| Breast cancer | 16702952 | CNVD |
| Medulloblastoma | 16968546 | CNVD |
| Prostate cancer | 19242612 | CNVD |
| Cancer | 22429812 | CNVD |
| Ewing''s sarcoma | 21437220 | CNVD |
| Ewing''s sarcoma | 22429812 | CNVD |
| Melanoma | 18172304 | CNVD |
| Endometrial cancer | 22040021 | CNVD |
| Breast cancer | 20837533 | CNVD |
| Breast cancer | 21264507 | CNVD |
| Glioblastoma multiforme | 19960244 | CNVD |
| Hepatocellular carcinoma | 22174799 | CNVD |
| Multiple myeloma | 21628407 | CNVD |
| Ovarian cancer | 22174824 | CNVD |
| Breast cancer | 21858162 | CNVD |
| Acute lymphoblastic leukemia | 20435627 | CNVD |
| Ewing''s sarcoma | 17952124 | CNVD |
| Breast cancer | 17001317 | CNVD |
| Breast cancer | 17133270 | CNVD |
| Acute lymphoblastic leukemia | 22237106 | CNVD |
| Breast cancer | 17603634 | CNVD |
| Prostate cancer | 16573809 | CNVD |
| Prostate cancer | 17245344 | CNVD |
| Basal cell lymphoma | 16317097 | CNVD |
| Diffuse large b-cell lymphoma | 16317097 | CNVD |
| Malignant peripheral nerve sheath tumor | 18522746 | CNVD |
| Endometrioid adenocarcinoma | 16974079 | CNVD |
| High-grade prostatic intraepithelial neoplasia | 16573809 | CNVD |
| T-cell prolymphocytic leukemia | 17713554 | CNVD |
| Acute lymphoblastic leukemia | 20067559 | CNVD |
| Medulloblastoma | 16783165 | CNVD |
| Breast cancer | 21806811 | CNVD |
| Ovarian clear cell carcinoma | 21343371 | CNVD |
| small cell lung cancer | 20016488 | CNVD |
| Myelofibrosis | 22110671 | CNVD |
| Poland''s syndrome | 22110015 | CNVD |
| Neuroblastoma | 21899760 | CNVD |
| Liver carcinoma | 19366792 | CNVD |
| Prostate cancer | 21965145 | CNVD |
| Cancer | 21183584 | CNVD |
| Ovarian cancer | 20844748 | CNVD |
| Lung cancer | 18438408 | CNVD |
| Prostate cancer | 19156837 | CNVD |
| Acute myeloid leukemia | 17377590 | CNVD |
| Breast cancer | 20409316 | CNVD |
| Hepatocellular carcinoma | 16750200 | CNVD |
| Breast cancer | 21509527 | CNVD |
| Lung cancer | 24585490 | CNVD |
| Cancer | 20164920 | CNVD |
| Pancreatic cancer | 17952125 | CNVD |
| Breast cancer | 22522925 | CNVD |
| Breast cancer | 21364760 | CNVD |
| Cancer | 20164919 | CNVD |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr16:77693800-77694800 | Enhancers | Fetal Stomach | stomach |
| 2 | chr16:77694000-77694800 | Enhancers | Fetal Brain Male | brain |
| 3 | chr16:77694400-77694800 | Enhancers | HUVEC | blood vessel |
| 4 | chr16:77694600-77694800 | Enhancers | Adipose Nuclei | Adipose |
