Variant report

Variant	esv17661
Chromosome Location	chr4:9625782-9632891
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 549 )
Associated
traits (count: 57 )

Variant overlapped rSNPs/rCNVs (count:549 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs386671513	chr4:9625793-9625794	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs578024958	chr4:9625797-9625798	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs138737919	chr4:9625813-9625814	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs377311241	chr4:9625824-9625825	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs386671514	chr4:9625825-9625826	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs9999630	chr4:9625826-9625827	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
7	rs184689952	chr4:9625854-9625855	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs542915626	chr4:9625861-9625862	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs189092898	chr4:9625868-9625869	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs576997392	chr4:9625869-9625870	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs575647961	chr4:9625871-9625872	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs62410031	chr4:9625873-9625874	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs10031125	chr4:9625879-9625880	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
14	rs548998839	chr4:9625888-9625889	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs532266180	chr4:9625903-9625904	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs567491981	chr4:9625905-9625906	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs138486080	chr4:9625912-9625913	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs181489164	chr4:9625962-9625963	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs143027513	chr4:9625963-9625964	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs375528958	chr4:9626009-9626010	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs569931632	chr4:9626019-9626020	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs113905817	chr4:9626025-9626026	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs367739814	chr4:9626042-9626043	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs571536322	chr4:9626052-9626053	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs146130013	chr4:9626061-9626062	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs553928707	chr4:9626086-9626087	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs565942506	chr4:9626088-9626089	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs10002614	chr4:9626095-9626096	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
29	rs554862510	chr4:9626103-9626104	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs186692764	chr4:9626105-9626106	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs28648949	chr4:9626132-9626133	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs140799727	chr4:9626142-9626143	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs66986411	chr4:9626143-9626144	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs374921890	chr4:9626148-9626149	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs28430858	chr4:9626149-9626150	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs398092155	chr4:9626154-9626155	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs73082817	chr4:9626178-9626179	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
38	rs541127243	chr4:9626183-9626184	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs559452591	chr4:9626202-9626203	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs529933097	chr4:9626223-9626224	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs542017695	chr4:9626237-9626238	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs35523563	chr4:9626239-9626240	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs189459090	chr4:9626265-9626266	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs369121107	chr4:9626271-9626272	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs530870475	chr4:9626286-9626287	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs180972357	chr4:9626294-9626295	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs6837106	chr4:9626304-9626305	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs557863952	chr4:9626305-9626306	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs375490528	chr4:9626308-9626309	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs112410592	chr4:9626309-9626310	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:57)

Disease	PMID	Source
Wilms tumour	21544195	CNVD
Colorectal cancer	16272173	CNVD
Non-syndromic sensorineural hearing loss	20606397	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Breast cancer	17603634	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Colorectal cancer	19359472	CNVD
Neuroblastoma	17533364	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Cancer	21637783	CNVD
Melanoma	21693616	CNVD
Squamous cell cancer	21044232	CNVD
Colorectal cancer	20709793	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Non-small cell lung cancer	21044232	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	17387387	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Cervical cancer	21062161	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Neuroblastoma	18923191	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Prostate cancer	18632612	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21785460	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Breast cancer	21509527	CNVD
Lung cancer	18438408	CNVD
Myelofibrosis	22110671	CNVD
Hirschsprung''s Disease	21712996	CNVD
Schizophrenia	22241247	CNVD
Autosomal-dominant microtia	18179897	CNVD
Glioma	17123091	CNVD
Colorectal cancer	20459617	CNVD
Breast cancer	17133270	CNVD
Sezary syndrome	18413736	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	21858162	CNVD
small cell lung cancer	20016488	CNVD
Urothelial carcinoma	21177765	CNVD
Neuroblastoma	20406844	CNVD
Breast cancer	22522925	CNVD
Schizophrenia	23813976	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:9619800-9628200	Weak transcription	Ovary	ovary
2	chr4:9624800-9637600	Weak transcription	Brain Hippocampus Middle	brain
3	chr4:9625200-9629400	Weak transcription	Stomach Smooth Muscle	stomach
4	chr4:9626000-9631000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr4:9626800-9631200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr4:9627000-9639000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr4:9627400-9630600	Weak transcription	Fetal Brain Female	brain
8	chr4:9627800-9634400	Weak transcription	Brain Anterior Caudate	brain
9	chr4:9628200-9630400	Strong transcription	Ovary	ovary
10	chr4:9628600-9630800	Weak transcription	Brain Angular Gyrus	brain
11	chr4:9629400-9630000	Strong transcription	Stomach Smooth Muscle	stomach
12	chr4:9630000-9631600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr4:9630400-9632000	Weak transcription	Ovary	ovary

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