Variant report

Variant	esv1791966
Chromosome Location	chr19:39921479-39954931
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2170)
CpG islands
(count:1771)
Chromatin interactive
region (count:125)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2170 , 50 per page) page: 1 2 3 4 5 6 7 ... 44

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr19:39926441-39927121	K562	blood:	n/a	n/a
2	ARID3A	chr19:39930878-39931224	HepG2	liver:	n/a	n/a
3	ARID3A	chr19:39926467-39926897	HepG2	liver:	n/a	n/a
4	ARID3A	chr19:39921284-39922065	K562	blood:	n/a	n/a
5	ARID3A	chr19:39929275-39929517	HepG2	liver:	n/a	n/a
6	ATF1	chr19:39921256-39922315	K562	blood:	n/a	n/a
7	ATF1	chr19:39935970-39936353	K562	blood:	n/a	n/a
8	ATF2	chr19:39922855-39923337	H1-hESC	embryonic stem cell:	n/a	n/a
9	ATF2	chr19:39926266-39926970	H1-hESC	embryonic stem cell:	n/a	n/a
10	ATF2	chr19:39926331-39927048	GM12878	blood:	n/a	n/a
11	ATF2	chr19:39935747-39936652	H1-hESC	embryonic stem cell:	n/a	n/a
12	ATF2	chr19:39921249-39922132	GM12878	blood:	n/a	n/a
13	ATF2	chr19:39923360-39923942	H1-hESC	embryonic stem cell:	n/a	n/a
14	ATF2	chr19:39926273-39927094	H1-hESC	embryonic stem cell:	n/a	n/a
15	ATF2	chr19:39935659-39936608	GM12878	blood:	n/a	n/a
16	ATF2	chr19:39938801-39939411	GM12878	blood:	n/a	n/a
17	ATF2	chr19:39926279-39927015	GM12878	blood:	n/a	n/a
18	ATF2	chr19:39921223-39922397	GM12878	blood:	n/a	n/a
19	ATF2	chr19:39921323-39922209	H1-hESC	embryonic stem cell:	n/a	n/a
20	ATF2	chr19:39935788-39936510	H1-hESC	embryonic stem cell:	n/a	n/a
21	ATF2	chr19:39922909-39924412	H1-hESC	embryonic stem cell:	n/a	n/a
22	ATF2	chr19:39935730-39936442	GM12878	blood:	n/a	n/a
23	ATF3	chr19:39926374-39926894	GM12878	blood:	n/a	n/a
24	ATF3	chr19:39926388-39926783	H1-hESC	embryonic stem cell:	n/a	n/a
25	ATF3	chr19:39921051-39922233	A549	lung:	n/a	n/a
26	ATF3	chr19:39935679-39936692	A549	lung:	n/a	n/a
27	ATF3	chr19:39929278-39929517	K562	blood:	n/a	n/a
28	ATF3	chr19:39926435-39926766	K562	blood:	n/a	n/a
29	ATF3	chr19:39935661-39936645	A549	lung:	n/a	n/a
30	ATF3	chr19:39926337-39926847	HepG2	liver:	n/a	n/a
31	ATF3	chr19:39926452-39926823	H1-hESC	embryonic stem cell:	n/a	n/a
32	ATF3	chr19:39921050-39922306	A549	lung:	n/a	n/a
33	ATF3	chr19:39926258-39927045	A549	lung:	n/a	n/a
34	ATF3	chr19:39921329-39921828	K562	blood:	n/a	n/a
35	ATF3	chr19:39921176-39921914	K562	blood:	n/a	n/a
36	ATF3	chr19:39929328-39929463	HepG2	liver:	n/a	n/a
37	ATF3	chr19:39925861-39927098	A549	lung:	n/a	n/a
38	ATF3	chr19:39926378-39926782	HepG2	liver:	n/a	n/a
39	BACH1	chr19:39936351-39936896	K562	blood:	n/a	n/a
40	BATF	chr19:39921355-39921877	GM12878	blood:	n/a	n/a
41	BATF	chr19:39938940-39939285	GM12878	blood:	n/a	n/a
42	BATF	chr19:39921278-39921895	GM12878	blood:	n/a	n/a
43	BCL11A	chr19:39921414-39921968	GM12878	blood:	n/a	chr19:39921457-39921466 chr19:39921458-39921467
44	BCL11A	chr19:39939056-39939241	GM12878	blood:	n/a	chr19:39939207-39939216 chr19:39939103-39939112 chr19:39939207-39939220 chr19:39939169-39939178
45	BCL3	chr19:39920999-39922359	A549	lung:	n/a	chr19:39921457-39921466 chr19:39921458-39921467
46	BCL3	chr19:39920896-39922420	A549	lung:	n/a	chr19:39921457-39921466 chr19:39921458-39921467
47	BCL3	chr19:39925742-39927236	A549	lung:	n/a	chr19:39926713-39926722 chr19:39927161-39927170 chr19:39926564-39926577 chr19:39925991-39926000
48	BCL3	chr19:39935250-39936808	A549	lung:	n/a	chr19:39936443-39936456 chr19:39936410-39936419
49	BCL3	chr19:39922499-39927500	A549	lung:	n/a	chr19:39926713-39926722 chr19:39927161-39927170 chr19:39926564-39926577 chr19:39925991-39926000 chr19:39924869-39924878
50	BCL3	chr19:39926377-39926974	GM12878	blood:	n/a	chr19:39926713-39926722 chr19:39926564-39926577

(count:1771 , 50 per page) page: 1 2 3 4 5 6 7 ... 36

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr19:39929516-39929566	PrEC	prostate:	n/a
2	chr19:39929516-39929566	ECC-1	luminal epithelium:	n/a
3	chr19:39929516-39929566	PrEC	prostate:	n/a
4	chr19:39929516-39929566	ECC-1	luminal epithelium:	n/a
5	chr19:39927495-39927545	PrEC	prostate:	n/a
6	chr19:39936306-39936356	GM12878	blood:	n/a
7	chr19:39935857-39935907	RPTEC	kidney:	n/a
8	chr19:39935944-39935994	MCF10A-Er-Src	breast:	n/a
9	chr19:39926476-39926526	HMEC	breast:	n/a
10	chr19:39936043-39936093	U87	brain:	n/a
11	chr19:39936620-39936670	HRCEpiC	kidney:	n/a
12	chr19:39926476-39926526	AG04449	skin:	fetal
13	chr19:39926786-39926836	HNPCEpiC	eye:	n/a
14	chr19:39932077-39932127	MCF10A-Er-Src	breast:	n/a
15	chr19:39936200-39936250	SKMC	muscle:	n/a
16	chr19:39927495-39927545	GM19239	blood:	n/a
17	chr19:39926476-39926526	AG09319	gingival:	n/a
18	chr19:39926689-39926739	SK-N-SH_RA	brain:	n/a
19	chr19:39926709-39926759	BE2_C	brain:	n/a
20	chr19:39926862-39926912	PANC-1	pancreas:	n/a
21	chr19:39936043-39936093	LNCaP	prostate:	n/a
22	chr19:39936306-39936356	PrEC	prostate:	n/a
23	chr19:39926689-39926739	SKMC	muscle:	n/a
24	chr19:39932077-39932127	SK-N-SH	brain:	n/a
25	chr19:39935944-39935994	AG04449	skin:	fetal
26	chr19:39926904-39926954	ProgFib	skin:	n/a
27	chr19:39936200-39936250	GM19239	blood:	n/a
28	chr19:39936212-39936262	NB4	blood:	n/a
29	chr19:39925660-39925710	NH-A	brain:	n/a
30	chr19:39935932-39935982	SK-N-MC	brain:	n/a
31	chr19:39926786-39926836	PFSK-1	brain:	n/a
32	chr19:39925660-39925710	SK-N-MC	brain:	n/a
33	chr19:39936306-39936356	T-47D	breast:	n/a
34	chr19:39926476-39926526	GM12892	blood:	n/a
35	chr19:39926786-39926836	NB4	blood:	n/a
36	chr19:39935996-39936046	AG09309	skin:	n/a
37	chr19:39935944-39935994	HPAEpiC	pulmonary alveolar:	n/a
38	chr19:39936306-39936356	AG09319	gingival:	n/a
39	chr19:39935857-39935907	NB4	blood:	n/a
40	chr19:39926689-39926739	HRE	kidney:	n/a
41	chr19:39936655-39936705	PrEC	prostate:	n/a
42	chr19:39935857-39935907	HEK293	kidney:	embryo
43	chr19:39926777-39926827	HAEpiC	amniotic membrane:	n/a
44	chr19:39924004-39924054	AG04450	lung:	fetal
45	chr19:39936040-39936090	HPAEpiC	pulmonary alveolar:	n/a
46	chr19:39926904-39926954	HNPCEpiC	eye:	n/a
47	chr19:39926682-39926732	CMK	blood:	n/a
48	chr19:39932077-39932127	GM12878	blood:	n/a
49	chr19:39929516-39929566	HEEpiC	esophagus:	n/a
50	chr19:39936655-39936705	RPTEC	kidney:	n/a

(count:125 , 50 per page) page: 1 2 3

No.	Distal block	Cell Line	Cell type
1	chr19:39934619..39937838-chr19:39970480..39972998,6	MCF-7	breast:
2	chr19:39948861..39951537-chr19:39958018..39962971,5	K562	blood:
3	chr19:39926370..39927938-chr19:40004340..40006529,2	K562	blood:
4	chr19:39832183..39834517-chr19:39925160..39926923,2	MCF-7	breast:
5	chr19:39925003..39927867-chr19:40028857..40032200,4	K562	blood:
6	chr19:39947815..39949510-chr19:39975198..39977049,2	MCF-7	breast:
7	chr19:39925979..39927964-chr19:39971323..39973932,2	K562	blood:
8	chr1:45187114..45187776-chr19:39935987..39936543,2	Hela-S3	cervix:
9	chr19:39947880..39949976-chr19:39958655..39960289,2	MCF-7	breast:
10	chr19:39925075..39926642-chr19:40022135..40025107,3	K562	blood:
11	chr19:39926302..39926892-chr5:73980939..73981515,2	Hela-S3	cervix:
12	chr19:39925083..39928891-chr19:40028576..40030872,3	K562	blood:
13	chr19:39921622..39923186-chr19:39964925..39966961,2	K562	blood:
14	chr10:112257511..112258462-chr19:39926345..39927316,2	Hela-S3	cervix:
15	chr19:39619125..39620938-chr19:39926907..39929414,2	K562	blood:
16	chr19:39926419..39927362-chr20:46130010..46130813,2	NB4	blood:
17	chr19:39950484..39953457-chr19:39955468..39957476,3	K562	blood:
18	chr19:39931789..39933472-chr19:44173116..44175103,2	MCF-7	breast:
19	chr19:39935972..39937694-chr19:39965602..39968199,3	K562	blood:
20	chr11:63952709..63953353-chr19:39926267..39927257,2	HCT-116	colon:
21	chr19:39930372..39932549-chr19:39934536..39937097,4	K562	blood:
22	chr1:44440402..44441005-chr19:39926600..39927279,2	HCT-116	colon:
23	chr19:39926454..39927410-chr19:49121867..49122447,2	NB4	blood:
24	chr19:39937361..39939355-chr19:39949611..39951111,2	K562	blood:
25	chr19:39934417..39936200-chr19:40029570..40032204,2	MCF-7	breast:
26	chr19:39917343..39919360-chr19:39932932..39935140,2	MCF-7	breast:
27	chr19:39925768..39926759-chr7:26240090..26240786,2	Hela-S3	cervix:
28	chr17:7475764..7476400-chr19:39923946..39924715,2	Hela-S3	cervix:
29	chr19:39898553..39902206-chr19:39948362..39950815,3	K562	blood:
30	chr19:39935872..39937858-chr19:40003816..40005942,2	MCF-7	breast:
31	chr19:39925314..39927864-chr19:40336547..40338108,2	K562	blood:
32	chr19:39922266..39923824-chr19:39949808..39952006,2	K562	blood:
33	chr19:39926269..39927245-chr9:116138857..116139630,2	HCT-116	colon:
34	chr19:39925899..39926885-chr6:32939557..32940381,2	Hela-S3	cervix:
35	chr19:39933642..39937454-chr19:40029470..40032868,6	MCF-7	breast:
36	chr1:193028352..193028962-chr19:39925889..39926592,2	Hela-S3	cervix:
37	chr10:14645782..14646722-chr19:39926153..39926683,2	Hela-S3	cervix:
38	chr19:39934545..39937545-chr19:40023023..40025430,4	MCF-7	breast:
39	chr19:39923160..39926894-chr19:40022027..40025011,8	K562	blood:
40	chr14:60558319..60559155-chr19:39926036..39926599,2	Hela-S3	cervix:
41	chr19:39925059..39926909-chr6:27114877..27117589,2	MCF-7	breast:
42	chr19:39925083..39926660-chr19:39982191..39985073,2	K562	blood:
43	chr19:39940271..39942805-chr19:39948760..39951555,2	K562	blood:
44	chr19:39832709..39837239-chr19:39925090..39928725,4	K562	blood:
45	chr19:39950586..39952165-chr19:39983591..39985551,2	K562	blood:
46	chr19:39938346..39940025-chr19:39963736..39966601,2	MCF-7	breast:
47	chr19:39921200..39923671-chr19:40028899..40031832,2	K562	blood:
48	chr12:56727084..56727677-chr19:39926807..39927350,2	NB4	blood:
49	chr19:39939856..39941421-chr19:40009261..40011843,2	K562	blood:
50	chr19:39949080..39951026-chr19:39959379..39961536,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RPS16-1	chr19:39932509-39936109	NONHSAT066299

No data

Variant related genes	Relation type
ENSG00000213922	TF binding region
RPS16	TF binding region
SUPT5H	TF binding region
ENSG00000213922	CpG island
RPS16	CpG island
SUPT5H	CpG island
ENSG00000265565	chromatin interactions
ENSG00000272426	chromatin interactions
ENSG00000090924	chromatin interactions
ENSG00000148908	chromatin interactions
ENSG00000176401	chromatin interactions
ENSG00000270103	chromatin interactions
ENSG00000070495	chromatin interactions
ENSG00000204256	chromatin interactions
ENSG00000116750	chromatin interactions
ENSG00000196235	chromatin interactions
ENSG00000105197	chromatin interactions
ENSG00000105202	chromatin interactions
ENSG00000266559	chromatin interactions
ENSG00000139725	chromatin interactions
ENSG00000255355	chromatin interactions
ENSG00000256940	chromatin interactions
ENSG00000251562	chromatin interactions
ENSG00000271303	chromatin interactions
ENSG00000124784	chromatin interactions
ENSG00000173457	chromatin interactions
ENSG00000178715	chromatin interactions
ENSG00000269246	chromatin interactions
ENSG00000140443	chromatin interactions
ENSG00000199377	chromatin interactions
ENSG00000130755	chromatin interactions
ENSG00000233016	chromatin interactions
ENSG00000269584	chromatin interactions
ENSG00000269410	chromatin interactions
ENSG00000272173	chromatin interactions
ENSG00000261360	chromatin interactions
ENSG00000105193	chromatin interactions
ENSG00000122566	chromatin interactions
ENSG00000117410	chromatin interactions
ENSG00000176396	chromatin interactions
ENSG00000198805	chromatin interactions
ENSG00000124151	chromatin interactions
ENSG00000180592	chromatin interactions
ENSG00000269792	chromatin interactions
ENSG00000049860	chromatin interactions
ENSG00000063177	chromatin interactions
ENSG00000065809	chromatin interactions
ENSG00000122565	chromatin interactions
ENSG00000258553	chromatin interactions
ENSG00000006712	chromatin interactions
ENSG00000135476	chromatin interactions
ENSG00000119431	chromatin interactions
ENSG00000155252	chromatin interactions
ENSG00000196923	chromatin interactions
ENSG00000138166	chromatin interactions
ENSG00000105204	chromatin interactions
ENSG00000126773	chromatin interactions
ENSG00000181038	chromatin interactions
ENSG00000135473	chromatin interactions
ENSG00000168439	chromatin interactions
ENSG00000186838	chromatin interactions
ENSG00000113811	chromatin interactions
ENSG00000198755	chromatin interactions
ENSG00000116747	chromatin interactions
ENSG00000166889	chromatin interactions
ENSG00000011422	chromatin interactions
ENSG00000270141	chromatin interactions
ENSG00000161960	chromatin interactions
ENSG00000179134	chromatin interactions

Extended variants
information (count: 1565 )
Associated
traits (count: 68 )

Variant overlapped rSNPs/rCNVs (count:1565 , 50 per page) page: 1 2 3 4 5 6 7 ... 32

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs251855	chr19:39921479-39921480	Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS	Chromatin interactive region	3 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs553673936	chr19:39921485-39921486	Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
3	rs553104413	chr19:39921511-39921512	Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
4	rs535463878	chr19:39921519-39921520	Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
5	rs539198043	chr19:39921533-39921534	Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS	Chromatin interactive region	3 gene(s)	Overlapped CNVs	n/a
6	rs373216123	chr19:39921588-39921589	Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription Active TSS	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
7	rs181558608	chr19:39921602-39921603	Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
8	rs35221567	chr19:39921659-39921660	Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
9	rs571608871	chr19:39921672-39921673	Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
10	rs57221478	chr19:39921687-39921688	Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
11	rs544943619	chr19:39921693-39921694	Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
12	rs368938297	chr19:39921695-39921696	Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
13	rs572748921	chr19:39921705-39921706	Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
14	rs540147538	chr19:39921715-39921716	Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
15	rs192413125	chr19:39921733-39921734	Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
16	rs529237806	chr19:39921754-39921755	Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
17	rs562048411	chr19:39921757-39921758	Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
18	rs530019842	chr19:39921791-39921792	Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription	Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
19	rs113745517	chr19:39921800-39921801	Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
20	rs368529883	chr19:39921808-39921809	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
21	rs184661658	chr19:39921809-39921810	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
22	rs377460752	chr19:39921822-39921823	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
23	rs141212566	chr19:39921830-39921831	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
24	rs111338886	chr19:39921851-39921852	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
25	rs534462899	chr19:39921855-39921856	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
26	rs181169464	chr19:39921886-39921887	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
27	rs145021994	chr19:39921903-39921904	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
28	rs372003050	chr19:39921910-39921911	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
29	rs117701804	chr19:39921925-39921926	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
30	rs144488398	chr19:39921947-39921948	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
31	rs535791982	chr19:39921992-39921993	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
32	rs146750897	chr19:39921995-39921996	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
33	rs556876824	chr19:39922026-39922027	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
34	rs562593135	chr19:39922039-39922040	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
35	rs186611529	chr19:39922044-39922045	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
36	rs539144546	chr19:39922158-39922159	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
37	rs686956	chr19:39922188-39922189	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	6 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
38	rs572685310	chr19:39922189-39922190	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
39	rs372103437	chr19:39922209-39922210	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
40	rs12977896	chr19:39922245-39922246	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
41	rs12979936	chr19:39922260-39922261	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
42	rs561756320	chr19:39922271-39922272	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
43	rs573846089	chr19:39922273-39922274	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
44	rs507512	chr19:39922287-39922288	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs563623939	chr19:39922288-39922289	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
46	rs111234035	chr19:39922292-39922293	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
47	rs552692965	chr19:39922308-39922309	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	5 gene(s)	Overlapped CNVs	n/a
48	rs564600988	chr19:39922347-39922348	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
49	rs80062468	chr19:39922369-39922370	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a
50	rs528621065	chr19:39922378-39922379	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	6 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:68)

Disease	PMID	Source
Myelodysplastic syndrome	17634407	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Cancer	21637783	CNVD
Retinoblastoma	21504564	CNVD
Medulloblastoma	21979893	CNVD
Ovarian cancer	21720365	CNVD
Cancer	20164919	CNVD
Thoracic aortic aneurysm	21092924	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Prostate cancer	18632612	CNVD
Autism	22495311	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Ductal carcinoma	22052326	CNVD
Pleomorphic liposarcoma	18784837	CNVD
Congenital nephrotic syndrome	18421352	CNVD
Astrocytoma	17934521	CNVD
Leukemia	17361228	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Breast cancer	21858162	CNVD
Breast cancer	17603634	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Oligodendroglial tumors	17285580	CNVD
renal disease	20603712	CNVD
Salivary gland adenoid cystic carcinoma	17545515	CNVD
Disorders of sex development	21048976	CNVD
Ovarian cancer	22174824	CNVD
Breast cancer	16608533	CNVD
Neuroblastoma	18923191	CNVD
Breast cancer	21364760	CNVD
Invasive pancreatic ductal carcinoma	18765526	CNVD
Rhabdomyosarcoma	16790082	CNVD
Chordoma	18071362	CNVD
Urothelial carcinoma	21177765	CNVD
small cell lung cancer	20016488	CNVD
Wilms tumour	21544195	CNVD
Mental retardation	19951919	CNVD
19q13.11 deletion syndrome	22378287	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21045282	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Ovarian neoplasms	16753589	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Metanephric adenoma	20802469	CNVD
Acute myeloid leukemia	16864856	CNVD
Lung cancer	21569311	CNVD
Bladder cancer	21909424	CNVD
Medulloblastoma	16783165	CNVD
Gastric cancer	18160780	CNVD
Hepatocellular carcinoma	16750200	CNVD
Basal cell lymphoma	19029149	CNVD
Breast cancer	20409316	CNVD
Diffuse large b-cell lymphoma	19029149	CNVD
Multiple myeloma	16616336	CNVD
Renal cell carcinoma	18765545	CNVD
Acute myeloid leukemia	20729466	CNVD
Lung cancer	18438408	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Breast cancer	22522925	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:2367 , 50 per page) page: 1 2 3 4 5 6 7 ... 48

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:39904800-39925800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr19:39905400-39923600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr19:39905600-39921600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr19:39905800-39923000	Weak transcription	Brain Anterior Caudate	brain
5	chr19:39905800-39923000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr19:39910000-39922600	Weak transcription	Liver	Liver
7	chr19:39911400-39923400	Weak transcription	Fetal Brain Male	brain
8	chr19:39913800-39922800	Weak transcription	Psoas Muscle	Psoas
9	chr19:39914800-39921600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr19:39915200-39921600	Weak transcription	Primary B cells from cord blood	blood
11	chr19:39915200-39921600	Weak transcription	Esophagus	oesophagus
12	chr19:39915400-39923000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr19:39915600-39921600	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr19:39915600-39921600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr19:39915600-39921600	Weak transcription	Gastric	stomach
16	chr19:39915800-39921600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr19:39916200-39921800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr19:39916800-39923000	Weak transcription	Dnd41	blood
19	chr19:39917000-39921600	Weak transcription	Thymus	Thymus
20	chr19:39917200-39921800	Weak transcription	Primary T cells from cord blood	blood
21	chr19:39917400-39921800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr19:39917400-39922800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr19:39917400-39923000	Weak transcription	Brain Angular Gyrus	brain
24	chr19:39917400-39923000	Weak transcription	Brain Substantia Nigra	brain
25	chr19:39918000-39921600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr19:39918000-39922200	Enhancers	Placenta	Placenta
27	chr19:39919600-39921600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr19:39919600-39921600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr19:39919600-39922000	Weak transcription	Aorta	Aorta
30	chr19:39919600-39923000	Weak transcription	Pancreas	Pancrea
31	chr19:39919600-39923200	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr19:39919600-39925000	Weak transcription	Right Atrium	heart
33	chr19:39919800-39921600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr19:39919800-39921600	Weak transcription	Fetal Intestine Small	intestine
35	chr19:39919800-39922800	Weak transcription	Fetal Intestine Large	intestine
36	chr19:39919800-39923000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr19:39919800-39923000	Weak transcription	Left Ventricle	heart
38	chr19:39919800-39923200	Weak transcription	HMEC	breast
39	chr19:39919800-39923600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr19:39919800-39923600	Weak transcription	Fetal Kidney	kidney
41	chr19:39919800-39924800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr19:39920000-39921600	Weak transcription	Right Ventricle	heart
43	chr19:39920000-39921600	Enhancers	Stomach Smooth Muscle	stomach
44	chr19:39920000-39921600	Weak transcription	NHLF	lung
45	chr19:39920000-39921800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr19:39920000-39921800	Weak transcription	NHDF-Ad	bronchial
47	chr19:39920000-39922800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr19:39920000-39923000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr19:39920000-39923000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr19:39920000-39923000	Weak transcription	Duodenum Smooth Muscle	Duodenum

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