Variant report

Variant	esv1792417
Chromosome Location	chr10:26263695-26395038
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:26360967..26361482-chr2:84342825..84343332,2	MCF-7	breast:
2	chr10:26331795..26332721-chr10:26558434..26559326,6	MCF-7	breast:
3	chr10:26331732..26332346-chr10:26446585..26447295,2	MCF-7	breast:
4	chr10:26331867..26332713-chr10:26558855..26559370,2	MCF-7	breast:

Extended variants
information (count: 5639 )
Associated
traits (count: 45 )

Variant overlapped rSNPs/rCNVs (count:5639 , 50 per page) page: 1 2 3 4 5 6 7 ... 113

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs140444240	chr10:26263751-26263752	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
2	rs189660873	chr10:26263758-26263759	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs572064513	chr10:26263785-26263786	Strong transcription Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs191090849	chr10:26263812-26263813	Strong transcription Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs564250823	chr10:26263844-26263845	Strong transcription Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs144138918	chr10:26263881-26263882	Strong transcription Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs183639757	chr10:26263935-26263936	Strong transcription Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs543465783	chr10:26263996-26263997	Strong transcription Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs563140295	chr10:26264026-26264027	Strong transcription ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs532065212	chr10:26264045-26264046	Strong transcription ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs548557032	chr10:26264046-26264047	Strong transcription ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs561948734	chr10:26264078-26264079	Strong transcription ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs189276954	chr10:26264134-26264135	Strong transcription ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs547572747	chr10:26264138-26264139	Strong transcription ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs182029363	chr10:26264177-26264178	Strong transcription ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs540902813	chr10:26264236-26264237	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs560662437	chr10:26264278-26264279	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs114633466	chr10:26264295-26264296	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs186656205	chr10:26264314-26264315	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs576295651	chr10:26264323-26264324	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs7915984	chr10:26264373-26264374	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
22	rs79141012	chr10:26264386-26264387	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs545166455	chr10:26264400-26264401	Weak transcription ZNF genes & repeats Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs375632145	chr10:26264403-26264404	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs190368346	chr10:26264426-26264427	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs149226955	chr10:26264447-26264448	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs372841687	chr10:26264563-26264564	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs370516988	chr10:26264596-26264597	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs546390670	chr10:26264674-26264675	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs558494721	chr10:26264687-26264688	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs146493353	chr10:26264688-26264689	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs201389359	chr10:26264689-26264690	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs372248656	chr10:26264695-26264696	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs542532431	chr10:26264714-26264715	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs34771159	chr10:26264758-26264759	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs77078620	chr10:26264761-26264762	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs35125314	chr10:26264765-26264766	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs541413463	chr10:26264786-26264787	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs527667002	chr10:26264787-26264788	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs35273266	chr10:26264798-26264799	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs547807809	chr10:26264799-26264800	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs564391437	chr10:26264810-26264811	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs181786709	chr10:26264856-26264857	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs60276209	chr10:26264862-26264863	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs368321673	chr10:26264908-26264909	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs569504195	chr10:26264924-26264925	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs535310356	chr10:26264932-26264933	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs548982240	chr10:26264946-26264947	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs565998749	chr10:26264962-26264963	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs76163196	chr10:26264979-26264980	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:45)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Myelofibrosis	22110671	CNVD
Autism	21439084	CNVD
Maculopathy	20981449	CNVD
Ovine squamous-cell carcinoma	17599052	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioblastoma multiforme	21525872	CNVD
Adrenocortical carcinoma	18281524	CNVD
Breast cancer	21364760	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Non-syndromic sensorineural hearing loss	22037309	CNVD

Chromatin state (count:206 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:26254800-26270200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:26255800-26263800	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr10:26262600-26264200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr10:26263200-26264000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:26263400-26264600	Enhancers	NH-A	brain
6	chr10:26263800-26264200	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
7	chr10:26264000-26264400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
8	chr10:26264000-26264400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
9	chr10:26264200-26267200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:26264200-26273200	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr10:26264400-26264800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr10:26264400-26289600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr10:26264600-26268000	Weak transcription	NH-A	brain
14	chr10:26267200-26268600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr10:26268000-26268800	Enhancers	NH-A	brain
16	chr10:26268600-26274600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:26270600-26271800	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
18	chr10:26271000-26271400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr10:26274600-26285400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr10:26277800-26278200	Enhancers	Fetal Lung	lung
21	chr10:26284600-26300800	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr10:26285400-26292800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr10:26289600-26289800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
24	chr10:26290000-26290600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
25	chr10:26292800-26293600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr10:26293000-26293200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr10:26293600-26295200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr10:26295200-26298800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr10:26298800-26300400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr10:26300200-26300400	Enhancers	iPS-20b Cell Line	embryonic stem cell
31	chr10:26300400-26301000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr10:26300400-26305400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr10:26302400-26310200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr10:26303600-26304000	Enhancers	Pancreatic Islets	Pancreatic Islet
35	chr10:26304000-26313200	Weak transcription	Pancreatic Islets	Pancreatic Islet
36	chr10:26305000-26306000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr10:26305000-26306000	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr10:26305400-26306000	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr10:26305400-26306000	Enhancers	HUES64 Cell Line	embryonic stem cell
40	chr10:26305400-26306000	Enhancers	iPS-20b Cell Line	embryonic stem cell
41	chr10:26306000-26306200	Enhancers	ES-I3 Cell Line	embryonic stem cell
42	chr10:26306000-26313600	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr10:26306000-26314200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
44	chr10:26306200-26314600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr10:26310200-26313800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr10:26310600-26314600	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr10:26311600-26312200	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr10:26311800-26312000	Weak transcription	HUES48 Cell Line	embryonic stem cell
49	chr10:26311800-26312200	Enhancers	iPS-18 Cell Line	embryonic stem cell
50	chr10:26312000-26312600	Enhancers	HUES48 Cell Line	embryonic stem cell

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