Variant report

Variant	esv1793784
Chromosome Location	chr9:24506904-24528892
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 274 )
Associated
traits (count: 144 )

Variant overlapped rSNPs/rCNVs (count:274 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs386733705	chr9:24506904-24506905	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs76624893	chr9:24506909-24506910	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs528468052	chr9:24506946-24506947	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs372950466	chr9:24506981-24506982	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs564321907	chr9:24507000-24507001	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs542819628	chr9:24507018-24507019	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs530939057	chr9:24507019-24507020	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs142694491	chr9:24507039-24507040	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs570572830	chr9:24507055-24507056	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs539592311	chr9:24507065-24507066	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs187591296	chr9:24507097-24507098	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs35962748	chr9:24507168-24507169	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs192426346	chr9:24507179-24507180	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs535740423	chr9:24507213-24507214	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs555447332	chr9:24507233-24507234	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs575154824	chr9:24507246-24507247	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs561484463	chr9:24507249-24507250	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs137987408	chr9:24507250-24507251	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs149474777	chr9:24507304-24507305	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs578168771	chr9:24507306-24507307	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs183814010	chr9:24507337-24507338	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs111317352	chr9:24507392-24507393	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs531932302	chr9:24507408-24507409	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs115235916	chr9:24507417-24507418	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs573241045	chr9:24507428-24507429	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs542096577	chr9:24507490-24507491	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs568812180	chr9:24507492-24507493	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs561974879	chr9:24507493-24507494	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs550413118	chr9:24507525-24507526	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs7035371	chr9:24507538-24507539	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
31	rs550818016	chr9:24507540-24507541	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs201755145	chr9:24507545-24507546	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs564560415	chr9:24507637-24507638	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs141889122	chr9:24507692-24507693	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs112982110	chr9:24507711-24507712	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs566670570	chr9:24507717-24507718	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs535775556	chr9:24507720-24507721	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs139566341	chr9:24507776-24507777	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs188908233	chr9:24507792-24507793	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs568773504	chr9:24507892-24507893	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs537819497	chr9:24507952-24507953	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs557570072	chr9:24507959-24507960	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs2805068	chr9:24507961-24507962	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs192237594	chr9:24507968-24507969	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs532547974	chr9:24507979-24507980	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs7847602	chr9:24507982-24507983	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs142799349	chr9:24508015-24508016	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs184349187	chr9:24508034-24508035	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs547951993	chr9:24508067-24508068	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs570007003	chr9:24508124-24508125	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:144)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Breast cancer	16608533	CNVD
Hodgkin''s lymphoma	18641027	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	16272173	CNVD
Hepatocellular carcinoma	16750200	CNVD
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Cervical cancer	21063398	CNVD
Retinoblastoma	22278416	CNVD
Splenic marginal zone lymphoma	18492102	CNVD
Melanoma	18172304	CNVD
Biliary cancer	19435499	CNVD
Gastric cancer	21586687	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Myopathy	18421352	CNVD
Neuroblastoma	18664255	CNVD
Acute lymphoblastic leukemia	18957548	CNVD
Myeloproliferative neoplasm	17564968	CNVD
Malignant meningioma	17937814	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Glioma	21971842	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Ewing''s sarcoma	21437220	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Oligodendroglial tumors	17285580	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Chordoma	18071362	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Chordoma	21602918	CNVD
Renal cell carcinoma	18592004	CNVD
Developmental delay	19490664	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
microdeletion syndrome	16199537	CNVD
Non-syndromic sensorineural hearing loss	21987784	CNVD
Cancer	20164919	CNVD
Ovarian cancer	21720365	CNVD
Non-syndromic sensorineural hearing loss	21030649	CNVD
small cell lung cancer	20016488	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Lung cancer	18438408	CNVD
Urothelial carcinoma	21177765	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Chronic myeloid leukemia	21384125	CNVD
Breast cancer	21785460	CNVD
Esophageal adenocarcinoma	19417022	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Renal cell carcinoma	21668985	CNVD
Myelodysplastic syndrome	21251322	CNVD
Autism	22495311	CNVD
Hepatocellular carcinoma	18803288	CNVD
Metanephric adenoma	20802469	CNVD
Developmental delay	21147756	CNVD
Pilocytic astrocytoma	18670637	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Melanoma	22183965	CNVD
Malignant peripheral nerve sheath tumor	18522746	CNVD
Non-small cell lung cancer	19010865	CNVD
Myoepithelioma	18604193	CNVD
Cancer	22183965	CNVD
Myelofibrosis	22110671	CNVD
Ewing''s sarcoma	22429812	CNVD
Neuroblastoma	21899760	CNVD
Glioblastoma multiforme	19435819	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Lung cancer	21911935	CNVD
Primary central nervous system lymphoma	21088137	CNVD
head and neck squamous cell carcinoma	21798897	CNVD
Cancer	21253487	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Gastrointestinal stromal cancer	16982739	CNVD
Glioblastoma multiforme	21922591	CNVD
Acute lymphoblastic leukemia	17443227	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
Urothelial cell carcinoma	18451213	CNVD
Glioma	17123091	CNVD
Mental retardation	17124404	CNVD
Acute lymphoblastic leukemia	19100363	CNVD
Acute lymphoblastic leukemia	18768390	CNVD
Leukemia	19602459	CNVD
Acute monocytic leukemia	16498392	CNVD
Esophageal squamous carcinoma	18405350	CNVD
Malignant mesothelioma	18160781	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Leukemia	18688285	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Acute myeloid leukemia	19651601	CNVD
Coronary Disease	20032323	CNVD
Squamous cell cancer	20885788	CNVD
Hirschsprung''s Disease	21712996	CNVD
Cancer	21732550	CNVD
Gastric cancer	22539939	CNVD
Cancer	21183584	CNVD
T-cell lymphomas	19863542	CNVD
Diffuse large b-cell lymphoma	18287131	CNVD
Metastatic melanoma	18483359	CNVD
Non-small cell lung cancer	20864512	CNVD
Cervical cancer	21062161	CNVD
Acute myeloid leukemia	16864856	CNVD
Glioblastoma	17090523	CNVD
Lung cancer	16773561	CNVD
Adenoid cystic carcinoma	17372589	CNVD
Colorectal cancer	16774939	CNVD
Bladder cancer	19088036	CNVD
Colorectal cancer	16272173	CNVD
Melanoma	16977458	CNVD
Glioblastoma multiforme	17369134	CNVD
Chagasic megaesophagus	20163722	CNVD
Melanoma	19566914	CNVD
Squamous cell cancer	19047905	CNVD
Lung adenocarcinoma	19525976	CNVD
Lung cancer	19525976	CNVD
Hodgkin''s lymphoma	18179710	CNVD
Melanoma	17363583	CNVD
Glioblastoma multiforme	19115005	CNVD
Adenoid cystic carcinoma	18332873	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Ovarian clear cell carcinoma	21343371	CNVD
Acute myeloid leukemia	21251322	CNVD
Oral cancer	21386901	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21364760	CNVD
Esophageal adenocarcinoma	18519675	CNVD
early-passage human iPS cells	21368824	CNVD
Non-syndromic sensorineural hearing loss	21293372	CNVD
Renal cell carcinoma	21215367	CNVD

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:24503000-24509800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr9:24503200-24509000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:24503200-24510000	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr9:24509000-24510800	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:24509800-24511200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
6	chr9:24509800-24511600	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
7	chr9:24510000-24510200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
8	chr9:24510800-24512200	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
9	chr9:24511000-24511200	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
10	chr9:24520400-24521400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr9:24522400-24522800	Enhancers	iPS-15b Cell Line	embryonic stem cell

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