Variant report
Variant | esv1793927 |
---|---|
Chromosome Location | chr4:8732373-9376536 |
allele | n/a |
Outlinks | Ensembl   UCSC |
- TF binding region (count:4048)
- CpG islands (count:306)
- Chromatin interactive region (count:83)
- LncRNA region (count:23)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
---|---|---|---|---|---|---|
1 | ARID3A | chr4:9155684-9155703 | HepG2 | liver: | n/a | n/a |
2 | ARID3A | chr4:9154835-9154872 | HepG2 | liver: | n/a | n/a |
3 | ATF1 | chr4:9154438-9155046 | K562 | blood: | n/a | n/a |
4 | ATF3 | chr4:8854995-8855309 | H1-hESC | embryonic stem cell: | n/a | n/a |
5 | ATF3 | chr4:8855081-8855244 | K562 | blood: | n/a | n/a |
6 | ATF3 | chr4:9154337-9154466 | K562 | blood: | n/a | n/a |
7 | ATF3 | chr4:8854977-8855363 | H1-hESC | embryonic stem cell: | n/a | n/a |
8 | BACH1 | chr4:8862941-8863709 | H1-hESC | embryonic stem cell: | n/a | n/a |
9 | BACH1 | chr4:8858777-8858889 | H1-hESC | embryonic stem cell: | n/a | n/a |
10 | BACH1 | chr4:8859610-8859971 | H1-hESC | embryonic stem cell: | n/a | n/a |
11 | BACH1 | chr4:8857632-8857756 | H1-hESC | embryonic stem cell: | n/a | n/a |
12 | BACH1 | chr4:8861399-8861529 | H1-hESC | embryonic stem cell: | n/a | n/a |
13 | BACH1 | chr4:8894725-8895016 | H1-hESC | embryonic stem cell: | n/a | n/a |
14 | BACH1 | chr4:8893693-8893726 | H1-hESC | embryonic stem cell: | n/a | n/a |
15 | BACH1 | chr4:8869917-8869990 | H1-hESC | embryonic stem cell: | n/a | n/a |
16 | BACH1 | chr4:8875855-8875971 | H1-hESC | embryonic stem cell: | n/a | n/a |
17 | BACH1 | chr4:8873787-8873987 | H1-hESC | embryonic stem cell: | n/a | n/a |
18 | BACH1 | chr4:8874989-8875170 | H1-hESC | embryonic stem cell: | n/a | n/a |
19 | BACH1 | chr4:8862268-8862627 | H1-hESC | embryonic stem cell: | n/a | n/a |
20 | BACH1 | chr4:8857031-8857091 | H1-hESC | embryonic stem cell: | n/a | n/a |
21 | BATF | chr4:9050779-9051110 | GM12878 | blood: | n/a | n/a |
22 | BATF | chr4:9172306-9172654 | GM12878 | blood: | n/a | n/a |
23 | BATF | chr4:8962972-8963416 | GM12878 | blood: | n/a | n/a |
24 | BATF | chr4:9167731-9168069 | GM12878 | blood: | n/a | n/a |
25 | BATF | chr4:9027943-9028103 | GM12878 | blood: | n/a | n/a |
26 | BATF | chr4:9078532-9078952 | GM12878 | blood: | n/a | n/a |
27 | BATF | chr4:9016052-9016284 | GM12878 | blood: | n/a | chr4:9016178-9016189 |
28 | BATF | chr4:9019180-9019377 | GM12878 | blood: | n/a | n/a |
29 | BATF | chr4:8947322-8947571 | GM12878 | blood: | n/a | chr4:8947446-8947457 |
30 | BATF | chr4:8877064-8877233 | GM12878 | blood: | n/a | chr4:8877125-8877134 |
31 | BATF | chr4:9155377-9155748 | GM12878 | blood: | n/a | n/a |
32 | BATF | chr4:9059496-9059973 | GM12878 | blood: | n/a | n/a |
33 | BATF | chr4:9078511-9078942 | GM12878 | blood: | n/a | n/a |
34 | BATF | chr4:9050852-9051138 | GM12878 | blood: | n/a | n/a |
35 | BATF | chr4:9167836-9168045 | GM12878 | blood: | n/a | n/a |
36 | BATF | chr4:9172276-9172654 | GM12878 | blood: | n/a | n/a |
37 | BATF | chr4:8911262-8911579 | GM12878 | blood: | n/a | n/a |
38 | BATF | chr4:9155849-9156145 | GM12878 | blood: | n/a | n/a |
39 | BATF | chr4:8947373-8947544 | GM12878 | blood: | n/a | chr4:8947446-8947457 |
40 | BATF | chr4:8977979-8978183 | GM12878 | blood: | n/a | n/a |
41 | BATF | chr4:9069049-9069339 | GM12878 | blood: | n/a | n/a |
42 | BATF | chr4:9027584-9027898 | GM12878 | blood: | n/a | n/a |
43 | BATF | chr4:9075010-9075406 | GM12878 | blood: | n/a | n/a |
44 | BATF | chr4:9160170-9160447 | GM12878 | blood: | n/a | n/a |
45 | BATF | chr4:9075036-9075407 | GM12878 | blood: | n/a | n/a |
46 | BATF | chr4:9093143-9093398 | GM12878 | blood: | n/a | n/a |
47 | BATF | chr4:9170428-9170639 | GM12878 | blood: | n/a | n/a |
48 | BATF | chr4:9125270-9125602 | GM12878 | blood: | n/a | n/a |
49 | BATF | chr4:9027580-9027939 | GM12878 | blood: | n/a | n/a |
50 | BATF | chr4:9074518-9074764 | GM12878 | blood: | n/a | n/a |
No. | Chromosome Location | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr4:9371392-9371442 | NT2-D1 | testis: | n/a |
2 | chr4:9371392-9371442 | NT2-D1 | testis: | n/a |
3 | chr4:9371392-9371442 | NHDF-neo | bronchial: | n/a |
4 | chr4:9355351-9355401 | HCT-116 | colon: | n/a |
5 | chr4:9355372-9355422 | GM19239 | blood: | n/a |
6 | chr4:9355351-9355401 | GM19239 | blood: | n/a |
7 | chr4:9371392-9371442 | HEEpiC | esophagus: | n/a |
8 | chr4:9352827-9352877 | SKMC | muscle: | n/a |
9 | chr4:9371043-9371093 | SK-N-SH | brain: | n/a |
10 | chr4:9355372-9355422 | HMEC | breast: | n/a |
11 | chr4:9371043-9371093 | BJ | skin: | n/a |
12 | chr4:9355372-9355422 | NHBE | bronchial: | n/a |
13 | chr4:9355372-9355422 | ECC-1 | luminal epithelium: | n/a |
14 | chr4:9371392-9371442 | Jurkat | blood: | n/a |
15 | chr4:9352827-9352877 | NHDF-neo | bronchial: | n/a |
16 | chr4:9352827-9352877 | PFSK-1 | brain: | n/a |
17 | chr4:9355351-9355401 | HepG2 | liver: | n/a |
18 | chr4:9355372-9355422 | U87 | brain: | n/a |
19 | chr4:9355351-9355401 | ovcar-3 | ovarian: | n/a |
20 | chr4:9352827-9352877 | HEEpiC | esophagus: | n/a |
21 | chr4:9371043-9371093 | T-47D | breast: | n/a |
22 | chr4:9371043-9371093 | HIPEpiC | eye: | n/a |
23 | chr4:9352827-9352877 | HRE | kidney: | n/a |
24 | chr4:9352827-9352877 | HCPEpiC | choroid plexus: | n/a |
25 | chr4:9355372-9355422 | HCPEpiC | choroid plexus: | n/a |
26 | chr4:9355372-9355422 | AG04449 | skin: | fetal |
27 | chr4:9371043-9371093 | AG04449 | skin: | fetal |
28 | chr4:9371392-9371442 | HepG2 | liver: | n/a |
29 | chr4:9355351-9355401 | SAEC | small airway: | n/a |
30 | chr4:9352827-9352877 | AG09319 | gingival: | n/a |
31 | chr4:9355372-9355422 | IMR90 | lung: | fetal |
32 | chr4:9355372-9355422 | AG04450 | lung: | fetal |
33 | chr4:9355351-9355401 | PFSK-1 | brain: | n/a |
34 | chr4:9355372-9355422 | AG09319 | gingival: | n/a |
35 | chr4:9352827-9352877 | H1-hESC | embryonic stem cell: | embryo |
36 | chr4:9371043-9371093 | SK-N-SH_RA | brain: | n/a |
37 | chr4:9355372-9355422 | HRE | kidney: | n/a |
38 | chr4:9371392-9371442 | HPAEpiC | pulmonary alveolar: | n/a |
39 | chr4:9355372-9355422 | HIPEpiC | eye: | n/a |
40 | chr4:9371392-9371442 | GM12878 | blood: | n/a |
41 | chr4:9355351-9355401 | BJ | skin: | n/a |
42 | chr4:9371392-9371442 | HRPEpiC | eye: | n/a |
43 | chr4:9355351-9355401 | A549 | lung: | n/a |
44 | chr4:9371043-9371093 | PrEC | prostate: | n/a |
45 | chr4:9371392-9371442 | HEK293 | kidney: | embryo |
46 | chr4:9355372-9355422 | RPTEC | kidney: | n/a |
47 | chr4:9371043-9371093 | NB4 | blood: | n/a |
48 | chr4:9355372-9355422 | BJ | skin: | n/a |
49 | chr4:9355372-9355422 | HNPCEpiC | eye: | n/a |
50 | chr4:9371043-9371093 | GM12878 | blood: | n/a |
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr4:8831480..8833563-chr4:8837142..8839666,2 | MCF-7 | breast: | |
2 | chr4:8841775..8843355-chr4:8852105..8854658,2 | MCF-7 | breast: | |
3 | chr4:8816885..8819513-chr4:8838676..8840311,2 | K562 | blood: | |
4 | chr4:8595963..8596810-chr4:8919438..8920172,2 | MCF-7 | breast: | |
5 | chr4:8649551..8650162-chr4:8919707..8920368,2 | MCF-7 | breast: | |
6 | chr4:8854005..8855600-chr4:8858236..8860977,2 | MCF-7 | breast: | |
7 | chr4:8776407..8778118-chr4:8779629..8781870,2 | MCF-7 | breast: | |
8 | chr4:8821716..8822276-chr4:8919332..8919908,2 | MCF-7 | breast: | |
9 | chr4:8732091..8733640-chr4:8882099..8884528,2 | MCF-7 | breast: | |
10 | chr4:8667609..8668516-chr4:8887656..8888210,2 | MCF-7 | breast: | |
11 | chr4:8821716..8822276-chr4:8919332..8919908,2 | MCF-7 | breast: | |
12 | chr4:8871272..8873108-chr4:8879640..8882009,2 | MCF-7 | breast: | |
13 | chr4:8916094..8919081-chr4:8922098..8925711,3 | K562 | blood: | |
14 | chr4:8781022..8782784-chr4:8786066..8789038,2 | K562 | blood: | |
15 | chr4:8874973..8877231-chr4:8879936..8882236,2 | K562 | blood: | |
16 | chr4:8690025..8690993-chr4:8919534..8920174,2 | MCF-7 | breast: | |
17 | chr4:8847923..8849486-chr4:8849539..8851969,2 | K562 | blood: | |
18 | chr4:8847923..8849486-chr4:8849539..8851969,2 | K562 | blood: | |
19 | chr4:8917493..8920418-chr4:8922098..8924605,3 | K562 | blood: | |
20 | chr4:8827560..8829523-chr4:8830683..8833064,2 | K562 | blood: | |
21 | chr4:8840268..8842596-chr4:8847457..8849928,2 | MCF-7 | breast: | |
22 | chr4:8852857..8854871-chr4:8860134..8862966,2 | K562 | blood: | |
23 | chr4:8827560..8829523-chr4:8830683..8833064,2 | K562 | blood: | |
24 | chr4:8875731..8878681-chr4:8880679..8882236,2 | K562 | blood: | |
25 | chr4:8987440..8989215-chr4:9123032..9125625,2 | MCF-7 | breast: | |
26 | chr4:8816885..8819513-chr4:8838676..8840311,2 | K562 | blood: | |
27 | chr4:8850333..8852547-chr4:8858670..8860391,2 | MCF-7 | breast: | |
28 | chr4:8785973..8787809-chr4:8789851..8791798,2 | MCF-7 | breast: | |
29 | chr4:8821602..8822427-chr4:8833992..8834964,2 | MCF-7 | breast: | |
30 | chr4:8785973..8787809-chr4:8789851..8791798,2 | MCF-7 | breast: | |
31 | chr4:8617932..8619527-chr4:8918338..8920672,2 | MCF-7 | breast: | |
32 | chr4:8836102..8838665-chr4:8853304..8855667,2 | MCF-7 | breast: | |
33 | chr4:8887296..8888159-chr4:8919813..8920332,3 | MCF-7 | breast: | |
34 | chr4:8778847..8780683-chr4:8898052..8900103,2 | MCF-7 | breast: | |
35 | chr4:9155081..9155863-chr4:79696788..79697581,2 | HCT-116 | colon: | |
36 | chr4:8841775..8843355-chr4:8852105..8854658,2 | MCF-7 | breast: | |
37 | chr4:8689272..8690551-chr4:8887541..8888216,4 | MCF-7 | breast: | |
38 | chr4:8720313..8722738-chr4:8763583..8766332,2 | MCF-7 | breast: | |
39 | chr4:8747645..8749434-chr4:8754889..8757407,2 | MCF-7 | breast: | |
40 | chr4:8689949..8690495-chr4:8884145..8884993,2 | MCF-7 | breast: | |
41 | chr4:8609002..8610016-chr4:8919155..8920078,6 | MCF-7 | breast: | |
42 | chr4:8853371..8854874-chr4:8860134..8861698,2 | K562 | blood: | |
43 | chr4:8840585..8842357-chr4:8849488..8852071,2 | MCF-7 | breast: | |
44 | chr4:8648999..8649710-chr4:8883912..8884471,2 | MCF-7 | breast: | |
45 | chr4:8916094..8919081-chr4:8922098..8925711,3 | K562 | blood: | |
46 | chr4:8874973..8877231-chr4:8879936..8882236,2 | K562 | blood: | |
47 | chr4:8887296..8888159-chr4:8919813..8920332,3 | MCF-7 | breast: | |
48 | chr4:8871272..8873108-chr4:8879640..8882009,2 | MCF-7 | breast: | |
49 | chr4:8778847..8780683-chr4:8898052..8900103,2 | MCF-7 | breast: | |
50 | chr4:8917493..8920418-chr4:8922098..8924605,3 | K562 | blood: |
(count:23 , 50 per page) page:
1
No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-HMX1-4 | chr4:9065968-9066056 | NONHSAT095123 |
2 | lnc-HMX1-1 | chr4:8747123-8747482 | ENSG00000250915 |
3 | lnc-HMX1-1 | chr4:8747165-8747482 | NONHSAT095113 |
4 | lnc-RP11-1286E23.8.1-1 | chr4:9174843-9174908 | XLOC_003448 |
5 | lnc-HMX1-1 | chr4:8747656-8747863 | NONHSAT095114 |
6 | lnc-HMX1-1 | chr4:8747165-8747482 | NONHSAT095114 |
7 | lnc-HMX1-4 | chr4:9065968-9066056 | NONHSAT095122 |
8 | lnc-HMX1-4 | chr4:9074628-9074691 | NONHSAT095122 |
9 | lnc-HMX1-1 | chr4:8747656-8747759 | ENSG00000250915 |
10 | lnc-HMX1-4 | chr4:9065968-9066056 | NONHSAT095124 |
11 | lnc-HMX1-4 | chr4:9036310-9037271 | NONHSAT095124 |
12 | lnc-ACOX3-3 | chr4:8860441-8860823 | ENSG00000258507.1 |
13 | lnc-HMX1-1 | chr4:8749072-8749394 | NONHSAT095114 |
14 | lnc-HMX1-2 | chr4:9022583-9022887 | NONHSAT095120 |
15 | lnc-RP11-1286E23.8.1-1 | chr4:9173538-9173895 | XLOC_003448 |
16 | lnc-HMX1-1 | chr4:8749072-8749394 | NONHSAT095113 |
17 | lnc-HMX1-4 | chr4:9036251-9037271 | NONHSAT095123 |
18 | lnc-HMX1-1 | chr4:8747672-8747863 | NONHSAT095113 |
19 | lnc-HMX1-3 | chr4:9053568-9053777 | NONHSAT095125 |
20 | lnc-ACOX3-3 | chr4:8862375-8862553 | ENSG00000258507.1 |
21 | lnc-HMX1-4 | chr4:9072963-9073140 | NONHSAT095124 |
22 | lnc-HMX1-4 | chr4:9083355-9083373 | NONHSAT095123 |
23 | lnc-HMX1-4 | chr4:9036251-9037271 | NONHSAT095122 |
No data |
No data |
Variant related genes | Relation type |
---|---|
USP17L11 | TF binding region |
USP17L22 | TF binding region |
ENSG00000264372 | TF binding region |
ENSG00000250804 | TF binding region |
ENSG00000197468 | TF binding region |
USP17L19 | TF binding region |
USP17L9P | TF binding region |
USP17L5 | TF binding region |
ALG1L14P | TF binding region |
USP17L10 | TF binding region |
FAM90A26 | TF binding region |
USP17L17 | TF binding region |
USP17L15 | TF binding region |
USP17L26 | TF binding region |
USP17L23 | TF binding region |
USP17L25 | TF binding region |
USP17L6P | TF binding region |
USP17L27 | TF binding region |
USP17L20 | TF binding region |
FAM86KP | TF binding region |
ENSG00000258507 | TF binding region |
USP17L18 | TF binding region |
ENSG00000250342 | TF binding region |
ENSG00000271057 | TF binding region |
ENSG00000251313 | TF binding region |
USP17L24 | TF binding region |
USP17L29 | TF binding region |
USP17L13 | TF binding region |
HMX1 | TF binding region |
USP17L14P | TF binding region |
USP17L12 | TF binding region |
ENSG00000238726 | TF binding region |
UNC93B8 | TF binding region |
USP17L30 | TF binding region |
ENSG00000250915 | TF binding region |
USP17L16P | TF binding region |
ENPP7P10 | TF binding region |
USP17L21 | TF binding region |
ENSG00000249347 | TF binding region |
USP17L28 | TF binding region |
USP17L11 | CpG island |
USP17L22 | CpG island |
ENSG00000264372 | CpG island |
ENSG00000250804 | CpG island |
ENSG00000197468 | CpG island |
USP17L19 | CpG island |
USP17L9P | CpG island |
USP17L5 | CpG island |
ALG1L14P | CpG island |
USP17L10 | CpG island |
FAM90A26 | CpG island |
USP17L17 | CpG island |
USP17L15 | CpG island |
USP17L26 | CpG island |
USP17L23 | CpG island |
USP17L25 | CpG island |
USP17L6P | CpG island |
USP17L27 | CpG island |
USP17L20 | CpG island |
FAM86KP | CpG island |
ENSG00000258507 | CpG island |
USP17L18 | CpG island |
ENSG00000250342 | CpG island |
ENSG00000271057 | CpG island |
ENSG00000251313 | CpG island |
USP17L24 | CpG island |
USP17L29 | CpG island |
USP17L13 | CpG island |
HMX1 | CpG island |
USP17L14P | CpG island |
USP17L12 | CpG island |
ENSG00000238726 | CpG island |
UNC93B8 | CpG island |
USP17L30 | CpG island |
ENSG00000250915 | CpG island |
USP17L16P | CpG island |
ENPP7P10 | CpG island |
USP17L21 | CpG island |
ENSG00000249347 | CpG island |
USP17L28 | CpG island |
ENSG00000138756 | chromatin interactions |
ENSG00000258507 | chromatin interactions |
ENSG00000205959 | chromatin interactions |
ENSG00000155275 | chromatin interactions |
ENSG00000087008 | chromatin interactions |
ENSG00000170142 | chromatin interactions |
ENSG00000260278 | chromatin interactions |
ENSG00000250915 | chromatin interactions |
No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | rs549617841 | chr4:8732408-8732409 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
2 | rs78699310 | chr4:8732423-8732424 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
3 | rs61199074 | chr4:8732449-8732450 | Weak transcription | n/a | n/a | LD-proxies of rSNPOverlapped rCNV | n/a |
4 | rs140890235 | chr4:8732452-8732453 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
5 | rs577858598 | chr4:8732475-8732476 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
6 | rs534499079 | chr4:8732483-8732484 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
7 | rs538745935 | chr4:8732503-8732504 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
8 | rs553878201 | chr4:8732504-8732505 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
9 | rs572095981 | chr4:8732523-8732524 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
10 | rs114096553 | chr4:8732531-8732532 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
11 | rs146567597 | chr4:8732558-8732559 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
12 | rs561967309 | chr4:8732572-8732573 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
13 | rs144321967 | chr4:8732618-8732619 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
14 | rs544533864 | chr4:8732642-8732643 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
15 | rs562669000 | chr4:8732651-8732652 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
16 | rs554149890 | chr4:8732675-8732676 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
17 | rs376265131 | chr4:8732676-8732677 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
18 | rs533190079 | chr4:8732697-8732698 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
19 | rs570342405 | chr4:8732751-8732752 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
20 | rs552626915 | chr4:8732752-8732753 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
21 | rs74324576 | chr4:8732764-8732765 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
22 | rs61123076 | chr4:8732765-8732766 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
23 | rs560304821 | chr4:8732772-8732773 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
24 | rs527251864 | chr4:8732792-8732793 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
25 | rs548704813 | chr4:8732807-8732808 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
26 | rs567909897 | chr4:8732835-8732836 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
27 | rs531903556 | chr4:8732836-8732837 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
28 | rs550108980 | chr4:8732861-8732862 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
29 | rs147786724 | chr4:8732862-8732863 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
30 | rs536972849 | chr4:8732868-8732869 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
31 | rs139456286 | chr4:8732869-8732870 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
32 | rs553818584 | chr4:8732894-8732895 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
33 | rs566040855 | chr4:8732897-8732898 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
34 | rs555183603 | chr4:8732917-8732918 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
35 | rs536605958 | chr4:8732988-8732989 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
36 | rs554655122 | chr4:8733005-8733006 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
37 | rs576427908 | chr4:8733152-8733153 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
38 | rs142535671 | chr4:8733156-8733157 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
39 | rs150929172 | chr4:8733169-8733170 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
40 | rs140901437 | chr4:8733183-8733184 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
41 | rs190314759 | chr4:8733214-8733215 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
42 | rs150161359 | chr4:8733217-8733218 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
43 | rs558638534 | chr4:8733329-8733330 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
44 | rs542748553 | chr4:8733341-8733342 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
45 | rs560719812 | chr4:8733372-8733373 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
46 | rs576880651 | chr4:8733389-8733390 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
47 | rs550047637 | chr4:8733397-8733398 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
48 | rs571626306 | chr4:8733442-8733443 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
49 | rs532543114 | chr4:8733483-8733484 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
50 | rs547592126 | chr4:8733485-8733486 | Weak transcription | n/a | n/a | Overlapped CNVs | n/a |
Disease | PMID | Source |
---|---|---|
Melanoma | 20688739 | CNVD |
Wilms tumour | 21544195 | CNVD |
Colorectal cancer | 16272173 | CNVD |
Non-syndromic sensorineural hearing loss | 20606397 | CNVD |
Oral squamous cell carcinoma | 17134496 | CNVD |
Basal cell lymphoma | 16317097 | CNVD |
Diffuse large b-cell lymphoma | 16317097 | CNVD |
Breast cancer | 17603634 | CNVD |
Chronic lymphocytic leukemia | 21546498 | CNVD |
Medulloblastoma | 21979893 | CNVD |
Basal cell lymphoma | 17053054 | CNVD |
Colorectal cancer | 19359472 | CNVD |
Neuroblastoma | 17533364 | CNVD |
head and neck squamous cell carcinoma | 17671120 | CNVD |
Cancer | 21637783 | CNVD |
Melanoma | 21693616 | CNVD |
Squamous cell cancer | 21044232 | CNVD |
Colorectal cancer | 20709793 | CNVD |
Esophageal squamous carcinoma | 21637470 | CNVD |
Non-small cell lung cancer | 21044232 | CNVD |
Ewing''s sarcoma | 21437220 | CNVD |
Glioblastoma multiforme | 17387387 | CNVD |
Endometrial cancer | 22040021 | CNVD |
Breast cancer | 21264507 | CNVD |
Glioblastoma multiforme | 19960244 | CNVD |
Cervical cancer | 21062161 | CNVD |
Gastrointestinal stromal cancer | 16982739 | CNVD |
Acute lymphoblastic leukemia | 22237106 | CNVD |
Glioblastoma multiforme | 21080181 | CNVD |
Chordoma | 21602918 | CNVD |
HIV/AIDS | 22032296 | CNVD |
Neuroblastoma | 18923191 | CNVD |
small cell lung cancer | 20016488 | CNVD |
T-cell prolymphocytic leukemia | 19278963 | CNVD |
Hodgkin''s lymphoma | 17606441 | CNVD |
Prostate cancer | 18632612 | CNVD |
Thoracic aortic aneurysm | 21092924 | CNVD |
Intellectual disability | 22102821 | CNVD |
Autism | 22495311 | CNVD |
Breast cancer | 21785460 | CNVD |
Chronic lymphocytic leukemia | 20421269 | CNVD |
Breast cancer | 21509527 | CNVD |
Lung cancer | 18438408 | CNVD |
Urothelial carcinoma | 21177765 | CNVD |
Myelofibrosis | 22110671 | CNVD |
Hirschsprung''s Disease | 21712996 | CNVD |
Schizophrenia | 22241247 | CNVD |
Autosomal-dominant microtia | 18179897 | CNVD |
Glioma | 17123091 | CNVD |
Colorectal cancer | 20459617 | CNVD |
Breast cancer | 17133270 | CNVD |
Sezary syndrome | 18413736 | CNVD |
Pancreatic ductal adenocarcinoma | 19077451 | CNVD |
Non-syndromic sensorineural hearing loss | 17122850 | CNVD |
Ependymoma | 20639864 | CNVD |
Non-syndromic sensorineural hearing loss | 18451855 | CNVD |
Pancreatic cancer | 17952125 | CNVD |
Schizophrenia | 23813976 | CNVD |
Non-syndromic sensorineural hearing loss | 22037309 | CNVD |
Non-syndromic sensorineural hearing loss | 21030649 | CNVD |
Autism | 21865298 | CNVD |
Breast cancer | 22522925 | CNVD |
early-passage human iPS cells | 21368824 | CNVD |
Schizophrenia | 20967226 | CNVD |
Non-syndromic sensorineural hearing loss | 19587683 | CNVD |
Ovarian clear cell carcinoma | 21343371 | CNVD |
Non-syndromic sensorineural hearing loss | 21293372 | CNVD |
Bipolar disorder | 19114987 | CNVD |
Breast cancer | 21858162 | CNVD |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:8728200-8732400 | Enhancers | Primary neutrophils fromperipheralblood | blood |
2 | chr4:8730400-8734000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
3 | chr4:8734400-8734800 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
4 | chr4:8736800-8744800 | Weak transcription | Right Atrium | heart |
5 | chr4:8737400-8737600 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
6 | chr4:8737600-8741800 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
7 | chr4:8739200-8743000 | ZNF genes & repeats | Foreskin Melanocyte Primary Cells skin01 | Skin |
8 | chr4:8740600-8740800 | Enhancers | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
9 | chr4:8740600-8743200 | Enhancers | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
10 | chr4:8740800-8741800 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
11 | chr4:8741000-8741400 | Bivalent Enhancer | Cortex derived primary cultured neurospheres | brain |
12 | chr4:8741200-8741400 | Bivalent Enhancer | Fetal Muscle Trunk | muscle |
13 | chr4:8741600-8742600 | Enhancers | Fetal Brain Male | brain |
14 | chr4:8741600-8742800 | Enhancers | Brain Germinal Matrix | brain |
15 | chr4:8741800-8742200 | Enhancers | HUES64 Cell Line | embryonic stem cell |
16 | chr4:8741800-8743000 | Enhancers | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
17 | chr4:8741800-8743000 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
18 | chr4:8741800-8743600 | Enhancers | ES-UCSF4 Cell Line | embryonic stem cell |
19 | chr4:8742000-8742200 | Bivalent Enhancer | Brain Hippocampus Middle | brain |
20 | chr4:8742000-8742200 | Enhancers | Esophagus | oesophagus |
21 | chr4:8742000-8742200 | Bivalent Enhancer | Fetal Stomach | stomach |
22 | chr4:8742000-8742400 | Enhancers | hESC Derived CD56+ Mesoderm Cultured Cells | ES cell derived |
23 | chr4:8742000-8742600 | Bivalent Enhancer | Fetal Brain Female | brain |
24 | chr4:8742000-8742800 | Enhancers | iPS DF 6.9 Cell Line | embryonic stem cell |
25 | chr4:8742600-8742800 | Bivalent Enhancer | Fetal Brain Male | brain |
26 | chr4:8742600-8743000 | Bivalent Enhancer | Fetal Muscle Trunk | muscle |
27 | chr4:8742800-8743200 | Enhancers | H1 Cell Line | embryonic stem cell |
28 | chr4:8743000-8743400 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
29 | chr4:8743000-8746000 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
30 | chr4:8743000-8748200 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
31 | chr4:8743200-8746400 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
32 | chr4:8743600-8743800 | ZNF genes & repeats | H1 Derived Mesenchymal Stem Cells | ES cell derived |
33 | chr4:8746000-8746400 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
34 | chr4:8746400-8747200 | Enhancers | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
35 | chr4:8746400-8748200 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
36 | chr4:8747800-8748200 | Weak transcription | iPS DF 6.9 Cell Line | embryonic stem cell |
37 | chr4:8748200-8748400 | Enhancers | Esophagus | oesophagus |
38 | chr4:8748200-8748400 | Flanking Bivalent TSS/Enh | Fetal Brain Male | brain |
39 | chr4:8748200-8748400 | ZNF genes & repeats | Gastric | stomach |
40 | chr4:8748200-8748600 | ZNF genes & repeats | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
41 | chr4:8748200-8748600 | ZNF genes & repeats | H9 Cell Line | embryonic stem cell |
42 | chr4:8748200-8748600 | Bivalent/Poised TSS | Fetal Kidney | kidney |
43 | chr4:8748200-8748800 | ZNF genes & repeats | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
44 | chr4:8748200-8749000 | ZNF genes & repeats | iPS DF 19.11 Cell Line | embryonic stem cell |
45 | chr4:8748400-8748600 | Bivalent Enhancer | Fetal Brain Male | brain |
46 | chr4:8748400-8748600 | Enhancers | Gastric | stomach |
47 | chr4:8748600-8750200 | Weak transcription | Gastric | stomach |
48 | chr4:8748800-8749600 | Weak transcription | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
49 | chr4:8749000-8749600 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
50 | chr4:8749600-8749800 | Enhancers | H1 Derived Neuronal Progenitor Cultured Cells | ES cell derived |