Variant report

Variant	esv1794028
Chromosome Location	chr3:86684769-86822085
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:32)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:32 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-CHMP2B-2	chr3:86708248-86708384	XLOC_002725
2	lnc-CHMP2B-2	chr3:86771631-86771837	XLOC_002725
3	lnc-CHMP2B-2	chr3:86760800-86760938	XLOC_002725
4	lnc-CHMP2B-2	chr3:86766575-86766677	NONHSAT090674
5	lnc-CHMP2B-2	chr3:86786328-86786371	NONHSAT090678
6	lnc-CHMP2B-2	chr3:86768367-86769064	NONHSAT090674
7	lnc-CHMP2B-2	chr3:86766576-86766677	NONHSAT090678
8	lnc-CHMP2B-2	chr3:86708291-86708384	NONHSAT090678
9	lnc-CHMP2B-4	chr3:86790896-86791074	l_2406_chr3:86790895-86851827_testes
10	lnc-CHMP2B-2	chr3:86766576-86766677	XLOC_002725
11	lnc-CHMP2B-2	chr3:86729264-86729335	NONHSAT090674
12	lnc-CHMP2B-2	chr3:86769940-86770054	NONHSAT090674
13	lnc-CHMP2B-2	chr3:86708248-86708384	XLOC_002725
14	lnc-CHMP2B-4	chr3:86811955-86812025	l_2406_chr3:86790895-86851827_testes
15	lnc-CHMP2B-2	chr3:86768368-86768498	XLOC_002725
16	lnc-CHMP2B-2	chr3:86771630-86771837	NONHSAT090674
17	lnc-CHMP2B-2	chr3:86771631-86771837	XLOC_002725
18	lnc-CHMP2B-2	chr3:86708206-86708384	XLOC_002725
19	lnc-CHMP2B-2	chr3:86708205-86708384	NONHSAT090674
20	lnc-CHMP2B-2	chr3:86768368-86768498	XLOC_002725
21	lnc-CHMP2B-2	chr3:86760800-86760938	XLOC_002725
22	lnc-CHMP2B-2	chr3:86766576-86766677	XLOC_002725
23	lnc-CHMP2B-2	chr3:86769941-86770054	XLOC_002725
24	lnc-CHMP2B-2	chr3:86769941-86770054	XLOC_002725
25	lnc-CHMP2B-2	chr3:86766576-86766677	XLOC_002725
26	lnc-CHMP2B-2	chr3:86760799-86760938	NONHSAT090674
27	lnc-CHMP2B-2	chr3:86769945-86770054	XLOC_002725
28	lnc-CHMP2B-2	chr3:86771631-86771837	XLOC_002725
29	lnc-CHMP2B-2	chr3:86768368-86768678	XLOC_002725
30	lnc-CHMP2B-2	chr3:86766576-86766677	XLOC_002725
31	lnc-CHMP2B-2	chr3:86729265-86729335	XLOC_002725
32	lnc-CHMP2B-2	chr3:86768368-86769064	XLOC_002725

No data

Variant related genes	Relation type
TRIM8	miRNA target sites
C14orf178	miRNA target sites
LCLAT1	miRNA target sites
ZFYVE27	miRNA target sites
C15orf57	miRNA target sites
AHR	miRNA target sites
POLA1	miRNA target sites
PLOD3	miRNA target sites
MCL1	miRNA target sites
MRPL42	miRNA target sites
PTEN	miRNA target sites

Extended variants
information (count: 1422 )
Associated
traits (count: 74 )

Variant overlapped rSNPs/rCNVs (count:1422 , 50 per page) page: 1 2 3 4 5 6 7 ... 29

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs7621447	chr3:86684769-86684770	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
2	rs569968069	chr3:86684770-86684771	Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs530908184	chr3:86684811-86684812	Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs112915293	chr3:86684828-86684829	Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs76680089	chr3:86684852-86684853	Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs34569208	chr3:86684864-86684865	Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs568322662	chr3:86684898-86684899	Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs139523068	chr3:86684935-86684936	Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs533338516	chr3:86684957-86684958	Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs549942402	chr3:86684961-86684962	Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs75046199	chr3:86684975-86684976	Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs554056682	chr3:86685001-86685002	Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs565857503	chr3:86685017-86685018	Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs62262330	chr3:86685024-86685025	Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs539193140	chr3:86685053-86685054	Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs557798877	chr3:86685092-86685093	Enhancers	n/a	n/a	Overlapped CNVs	n/a
17	rs575968602	chr3:86685107-86685108	Enhancers	n/a	n/a	Overlapped CNVs	n/a
18	rs73844270	chr3:86685129-86685130	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
19	rs529197681	chr3:86685145-86685146	Enhancers	n/a	n/a	Overlapped CNVs	n/a
20	rs192057245	chr3:86685153-86685154	Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs574032379	chr3:86685161-86685162	Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs75156195	chr3:86685182-86685183	Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs367912036	chr3:86685202-86685203	Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs377098211	chr3:86685204-86685205	Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs183995562	chr3:86685205-86685206	Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs7624039	chr3:86685214-86685215	Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
27	rs571940350	chr3:86685246-86685247	Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs545196341	chr3:86685284-86685285	Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs563757184	chr3:86685298-86685299	Enhancers	n/a	n/a	Overlapped CNVs	n/a
30	rs530821974	chr3:86685382-86685383	Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs187743626	chr3:86685464-86685465	Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs561264860	chr3:86685465-86685466	Enhancers	n/a	n/a	Overlapped CNVs	n/a
33	rs529233297	chr3:86685509-86685510	Enhancers	n/a	n/a	Overlapped CNVs	n/a
34	rs143205370	chr3:86685510-86685511	Enhancers	n/a	n/a	Overlapped CNVs	n/a
35	rs545566607	chr3:86685596-86685597	Enhancers	n/a	n/a	Overlapped CNVs	n/a
36	rs376254461	chr3:86685600-86685601	Enhancers	n/a	n/a	Overlapped CNVs	n/a
37	rs146663600	chr3:86685654-86685655	Enhancers	n/a	n/a	Overlapped CNVs	n/a
38	rs528291384	chr3:86685656-86685657	Enhancers	n/a	n/a	Overlapped CNVs	n/a
39	rs569690560	chr3:86685661-86685662	Enhancers	n/a	n/a	Overlapped CNVs	n/a
40	rs536736458	chr3:86685694-86685695	Enhancers	n/a	n/a	Overlapped CNVs	n/a
41	rs367689722	chr3:86685719-86685720	Enhancers	n/a	n/a	Overlapped CNVs	n/a
42	rs554988437	chr3:86685733-86685734	Enhancers	n/a	n/a	Overlapped CNVs	n/a
43	rs551431577	chr3:86685740-86685741	Enhancers	n/a	n/a	Overlapped CNVs	n/a
44	rs374140409	chr3:86685851-86685852	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs573276697	chr3:86685858-86685859	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs182386343	chr3:86685945-86685946	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs201326636	chr3:86685974-86685975	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs553225613	chr3:86686047-86686048	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs562891380	chr3:86686052-86686053	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs578114380	chr3:86686075-86686076	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:74)

Disease	PMID	Source
Glioblastoma multiforme	21080181	CNVD
Melanoma	18172304	CNVD
head and neck squamous cell carcinoma	17671120	CNVD
Insulin resistance	16721378	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Ewing''s sarcoma	21437220	CNVD
Neuroblastoma	21484798	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Oral cancer	19627613	CNVD
Renal cell carcinoma	19461508	CNVD
Epithelial cancer	22065749	CNVD
Acute lymphoblastic leukemia	21390130	CNVD
Acute myeloid leukemia	16864856	CNVD
Liposarcoma	21253554	CNVD
Basal cell lymphoma	21115979	CNVD
Endometrial cancer	22040021	CNVD
Pancreatic endocrine tumor	20981439	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Glioblastoma multiforme	17387387	CNVD
Oral cancer	21386901	CNVD
Cutaneous squamous cell carcinomas	19131950	CNVD
Acute myeloid leukemia	20729466	CNVD
Medulloblastoma	21979893	CNVD
Basal cell lymphoma	17053054	CNVD
Esophageal cancer	21851588	CNVD
Uveal melanoma	21693616	CNVD
Retinoblastoma	21504564	CNVD
Renal cell carcinoma	21668985	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	17603634	CNVD
Esophageal cancer	20955586	CNVD
Uveal melanoma	20484589	CNVD
Autism	22495311	CNVD
Lung cancer	18438408	CNVD
Hirschsprung''s Disease	21712996	CNVD
Hepatocellular carcinoma	16750200	CNVD
Cancer	21183584	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Bipolar disorder	20877625	CNVD
Bipolar disorder	21956041	CNVD
Bipolar disorder	22241247	CNVD
Biliary cancer	18923514	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Prostate cancer	21965145	CNVD
Cancer	21129771	CNVD
Congenital diaphragmatic hernia	21085971	CNVD
Cervical cancer	21062161	CNVD
Squamous cell cancer	20885788	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Cancer	20164919	CNVD
Metanephric adenoma	20802469	CNVD
Bipolar disorder	18458673	CNVD
Breast cancer	22032731	CNVD
Wilms tumour	21544195	CNVD
Colorectal cancer	16272173	CNVD
Invasive pancreatic ductal carcinoma	16982739	CNVD
Soft tissue tumor	16732325	CNVD
small cell lung cancer	20016488	CNVD
Neurodevelopmental disorder	22521361	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Mental retardation	17124404	CNVD
Esophageal squamous carcinoma	17470683	CNVD
Myelofibrosis	22110671	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
craniofacial dysmorphism	21918468	CNVD
Cancer	20164920	CNVD

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86682200-86685800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr3:86683200-86685000	Enhancers	Brain Germinal Matrix	brain
3	chr3:86684000-86685800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr3:86685800-86686400	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr3:86686400-86687000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
6	chr3:86687400-86688200	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr3:86687600-86688200	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr3:86690600-86691200	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
9	chr3:86696600-86701800	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr3:86700800-86708200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr3:86701200-86702000	Enhancers	Brain Germinal Matrix	brain
12	chr3:86701400-86701800	Enhancers	Fetal Brain Female	brain
13	chr3:86701800-86704400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr3:86702000-86702400	Weak transcription	Brain Germinal Matrix	brain
15	chr3:86702400-86703000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:86702400-86703000	Enhancers	Brain Germinal Matrix	brain
17	chr3:86702600-86702800	Enhancers	Fetal Intestine Large	intestine
18	chr3:86702600-86702800	Enhancers	Fetal Intestine Small	intestine
19	chr3:86702600-86703200	Enhancers	ES-I3 Cell Line	embryonic stem cell
20	chr3:86702600-86703200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr3:86702600-86703200	Enhancers	iPS-18 Cell Line	embryonic stem cell
22	chr3:86702600-86703200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr3:86702600-86703400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr3:86702800-86703200	Enhancers	H1 Cell Line	embryonic stem cell
25	chr3:86702800-86703200	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr3:86702800-86703200	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr3:86702800-86703400	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr3:86702800-86703400	Active TSS	Fetal Intestine Large	intestine
29	chr3:86702800-86703400	Active TSS	Fetal Intestine Small	intestine
30	chr3:86703000-86707200	Weak transcription	Brain Germinal Matrix	brain
31	chr3:86703200-86704200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
32	chr3:86703400-86703600	Enhancers	Fetal Intestine Small	intestine
33	chr3:86704200-86704400	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr3:86707200-86708400	Enhancers	Brain Germinal Matrix	brain
35	chr3:86707800-86708400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr3:86720600-86721600	Enhancers	Fetal Intestine Large	intestine
37	chr3:86722200-86722800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr3:86742400-86742600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
39	chr3:86742600-86742800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr3:86742800-86743600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr3:86743200-86743800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
42	chr3:86743200-86744000	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr3:86743400-86743600	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr3:86743400-86743600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
45	chr3:86743600-86744400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
46	chr3:86743600-86744800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
47	chr3:86743800-86749800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
48	chr3:86744400-86745000	Enhancers	iPS-15b Cell Line	embryonic stem cell
49	chr3:86744400-86745400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr3:86744800-86745000	Enhancers	ES-I3 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links