Variant report

Variant	esv1794831
Chromosome Location	chr11:24529770-24537683
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:24534222..24536357-chr11:24537627..24539546,2	MCF-7	breast:
2	chr11:24534222..24536357-chr11:24537627..24539546,2	MCF-7	breast:

Extended variants
information (count: 333 )
Associated
traits (count: 55 )

Variant overlapped rSNPs/rCNVs (count:333 , 50 per page) page: 1 2 3 4 5 6 7

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs529177213	chr11:24529797-24529798	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs368178482	chr11:24529854-24529855	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
3	rs560203460	chr11:24529855-24529856	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
4	rs565376596	chr11:24529888-24529889	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
5	rs375559256	chr11:24529963-24529964	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
6	rs151098338	chr11:24530018-24530019	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
7	rs117042619	chr11:24530025-24530026	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
8	rs202066930	chr11:24530053-24530054	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
9	rs188722082	chr11:24530057-24530058	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
10	rs77845255	chr11:24530058-24530059	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
11	rs141030821	chr11:24530077-24530078	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
12	rs150282699	chr11:24530116-24530117	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
13	rs570249747	chr11:24530170-24530171	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
14	rs528400472	chr11:24530182-24530183	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
15	rs191157806	chr11:24530204-24530205	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
16	rs11027958	chr11:24530248-24530249	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
17	rs1509586	chr11:24530273-24530274	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
18	rs183456689	chr11:24530331-24530332	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
19	rs16912643	chr11:24530368-24530369	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs139009101	chr11:24530390-24530391	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
21	rs375911573	chr11:24530444-24530445	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
22	rs543487518	chr11:24530453-24530454	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
23	rs141968620	chr11:24530521-24530522	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
24	rs187392737	chr11:24530591-24530592	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
25	rs542516538	chr11:24530603-24530604	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
26	rs559345181	chr11:24530621-24530622	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
27	rs528107008	chr11:24530623-24530624	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
28	rs372894448	chr11:24530629-24530630	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
29	rs12292905	chr11:24530656-24530657	Weak transcription Enhancers	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
30	rs530555669	chr11:24530763-24530764	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
31	rs74920196	chr11:24530790-24530791	Weak transcription Enhancers	n/a	n/a	Overlapped CNVs	n/a
32	rs75745973	chr11:24530825-24530826	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs536005149	chr11:24530830-24530831	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs556102323	chr11:24530856-24530857	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs192182230	chr11:24530901-24530902	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs77992569	chr11:24530915-24530916	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs377050664	chr11:24530930-24530931	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs149579766	chr11:24530990-24530991	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs375763474	chr11:24531031-24531032	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs10834360	chr11:24531093-24531094	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs543550640	chr11:24531128-24531129	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs184555759	chr11:24531163-24531164	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs188447509	chr11:24531169-24531170	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs542379420	chr11:24531173-24531174	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs371935350	chr11:24531193-24531194	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs114637760	chr11:24531201-24531202	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs7111245	chr11:24531208-24531209	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
48	rs545274721	chr11:24531211-24531212	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs78645568	chr11:24531212-24531213	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs80178846	chr11:24531244-24531245	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:55)

Disease	PMID	Source
Burkitt''s lymphoma	19759907	CNVD
Breast cancer	17603634	CNVD
Medulloblastoma	21979893	CNVD
Thyroid cancer	19087340	CNVD
Melanoma	18172304	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Wilms tumour	21544195	CNVD
Parathyroid adenoma	22454399	CNVD
Chordoma	21602918	CNVD
Breast cancer	21949216	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	19222835	CNVD
T-cell acute lymphoblastic leukemia	20065082	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Endometrial cancer	22040021	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	21264507	CNVD
Beckwith-Wiedemann syndrome	21518781	CNVD
Wilms tumour	21518781	CNVD
Hepatoblastoma	21518781	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Paraganglioma	17535989	CNVD
Pulmonary chondroma	17535989	CNVD
Gastric cancer	17908304	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Multiple myeloma	20724749	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Multiple myeloma	16461302	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Breast cancer	21785460	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Medulloblastoma	16783165	CNVD
small cell lung cancer	20016488	CNVD
Congenital diaphragmatic hernia	21525063	CNVD
Renal cell carcinoma	18194544	CNVD
Myelofibrosis	22110671	CNVD
Potocki-Shaffer syndrome	19222835	CNVD
WAGR syndrome	19222835	CNVD
Chordoma	18071362	CNVD
Autism	22102821	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Breast cancer	21364760	CNVD
Pancreatic ductal adenocarcinoma	19077451	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:24521200-24535800	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr11:24529800-24530800	Enhancers	Fetal Heart	heart
3	chr11:24530600-24530800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr11:24530800-24534800	Weak transcription	Fetal Heart	heart
5	chr11:24530800-24535600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr11:24532400-24532600	Enhancers	Fetal Intestine Large	intestine
7	chr11:24532600-24533200	Weak transcription	Fetal Intestine Large	intestine
8	chr11:24533000-24533800	Enhancers	Fetal Intestine Small	intestine
9	chr11:24533200-24534400	Enhancers	Fetal Intestine Large	intestine
10	chr11:24533400-24533800	Enhancers	Stomach Mucosa	stomach
11	chr11:24533400-24533800	Enhancers	NH-A	brain
12	chr11:24533800-24536400	Weak transcription	Fetal Intestine Small	intestine
13	chr11:24534400-24536400	Weak transcription	Fetal Intestine Large	intestine
14	chr11:24534800-24535600	Enhancers	Fetal Heart	heart
15	chr11:24535000-24536000	Enhancers	Fetal Brain Female	brain
16	chr11:24535200-24536000	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr11:24535200-24536000	Enhancers	Fetal Brain Male	brain
18	chr11:24535200-24536600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr11:24535200-24536600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr11:24535200-24537000	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr11:24535200-24537000	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr11:24535200-24537200	Enhancers	H9 Cell Line	embryonic stem cell
23	chr11:24535400-24535800	Enhancers	Cortex derived primary cultured neurospheres	brain
24	chr11:24535400-24536200	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr11:24535600-24535800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr11:24535600-24536000	Flanking Active TSS	Fetal Heart	heart
27	chr11:24535600-24536200	Enhancers	Fetal Kidney	kidney
28	chr11:24535600-24536400	Enhancers	iPS-20b Cell Line	embryonic stem cell
29	chr11:24535600-24536600	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr11:24535800-24536200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
31	chr11:24535800-24536200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr11:24535800-24536200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
33	chr11:24535800-24536600	Enhancers	H1 Cell Line	embryonic stem cell
34	chr11:24536000-24536800	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr11:24536000-24536800	Enhancers	Fetal Heart	heart
36	chr11:24536200-24536600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr11:24536400-24538400	Enhancers	Fetal Intestine Small	intestine
38	chr11:24536400-24538800	Enhancers	Fetal Intestine Large	intestine
39	chr11:24536800-24537600	Enhancers	HUES6 Cell Line	embryonic stem cell
40	chr11:24536800-24539800	Weak transcription	Fetal Heart	heart
41	chr11:24537000-24537800	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr11:24537000-24540000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr11:24537200-24538400	Enhancers	Sigmoid Colon	Sigmoid Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links