Variant report

Variant	esv1795675
Chromosome Location	chr10:37436096-37494701
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr10:37487403-37487685	A549	lung:	n/a	n/a
2	CEBPB	chr10:37487363-37487743	A549	lung:	n/a	n/a
3	CEBPB	chr10:37487370-37487673	HepG2	liver:	n/a	n/a
4	CTCF	chr10:37486131-37486169	GM20000	blood:	n/a	n/a
5	CTCF	chr10:37452696-37452762	Kidney_OC	kidney:	n/a	n/a
6	CTCF	chr10:37446718-37446806	Lung_OC	lung:	n/a	n/a
7	CTCF	chr10:37452481-37452521	Medullo	brain:	n/a	n/a
8	CTCF	chr10:37477527-37477727	Lung_OC	lung:	n/a	n/a
9	CTCF	chr10:37447106-37447182	Spleen_OC	spleen:	n/a	n/a
10	CTCF	chr10:37484346-37484411	GM20000	blood:	n/a	n/a
11	CTCF	chr10:37491863-37491898	Lung_OC	lung:	n/a	n/a
12	CTCF	chr10:37481138-37481209	Kidney_OC	kidney:	n/a	n/a
13	CTCF	chr10:37469711-37469782	Lung_OC	lung:	n/a	n/a
14	CTCF	chr10:37486296-37486408	GM13977	blood:	n/a	n/a
15	CTCF	chr10:37458752-37458787	Lung_OC	lung:	n/a	n/a
16	CTCF	chr10:37442131-37442208	GM20000	blood:	n/a	n/a
17	CTCF	chr10:37491880-37492030	HepG2	liver:	n/a	n/a
18	CTCF	chr10:37442159-37442261	K562	blood:	n/a	n/a
19	CTCF	chr10:37475018-37475056	Spleen_OC	spleen:	n/a	n/a
20	CTCF	chr10:37438290-37438316	GM13976	blood:	n/a	n/a
21	E2F4	chr10:37446270-37446422	MCF10A-Er-Src	breast:	n/a	n/a
22	EP300	chr10:37451298-37451858	A549	lung:	n/a	n/a
23	EP300	chr10:37451171-37451918	A549	lung:	n/a	n/a
24	FOXA1	chr10:37482293-37482719	HepG2	liver:	n/a	n/a
25	FOXA1	chr10:37470551-37471013	HepG2	liver:	n/a	n/a
26	FOXA1	chr10:37458759-37459221	HepG2	liver:	n/a	n/a
27	FOXA2	chr10:37474195-37474667	A549	lung:	n/a	chr10:37474292-37474304
28	FOXA2	chr10:37485922-37486464	A549	lung:	n/a	chr10:37486060-37486072
29	FOXA2	chr10:37459827-37460275	A549	lung:	n/a	n/a
30	FOXA2	chr10:37451397-37451744	A549	lung:	n/a	chr10:37451428-37451440
31	FOXA2	chr10:37471564-37472016	A549	lung:	n/a	n/a
32	FOXA2	chr10:37459763-37460276	A549	lung:	n/a	n/a
33	FOXA2	chr10:37471589-37472076	A549	lung:	n/a	n/a
34	FOXA2	chr10:37462328-37462875	A549	lung:	n/a	chr10:37462491-37462503
35	MAFF	chr10:37447788-37447979	HepG2	liver:	n/a	n/a
36	MAFK	chr10:37447832-37448011	IMR90	lung:	n/a	chr10:37447929-37447940 chr10:37447877-37447893 chr10:37447928-37447942
37	MAFK	chr10:37487282-37487403	HepG2	liver:	n/a	chr10:37487343-37487358
38	MAFK	chr10:37439661-37439715	HepG2	liver:	n/a	n/a
39	MAFK	chr10:37487268-37487416	HepG2	liver:	n/a	chr10:37487343-37487358
40	MAFK	chr10:37447778-37447999	HepG2	liver:	n/a	chr10:37447929-37447940 chr10:37447877-37447893 chr10:37447928-37447942
41	MAFK	chr10:37447782-37448058	HepG2	liver:	n/a	chr10:37447929-37447940 chr10:37447877-37447893 chr10:37447928-37447942
42	MAFK	chr10:37436870-37437040	HepG2	liver:	n/a	n/a
43	NR3C1	chr10:37471535-37472094	A549	lung:	n/a	chr10:37471855-37471872
44	NR3C1	chr10:37471501-37472116	A549	lung:	n/a	chr10:37471855-37471872
45	NR3C1	chr10:37459716-37460283	A549	lung:	n/a	n/a
46	NR3C1	chr10:37483454-37483779	A549	lung:	n/a	n/a
47	NR3C1	chr10:37483385-37483688	A549	lung:	n/a	n/a
48	NR3C1	chr10:37448659-37449129	A549	lung:	n/a	chr10:37448958-37448975
49	NR3C1	chr10:37448651-37449170	A549	lung:	n/a	chr10:37448958-37448975
50	NR3C1	chr10:37483252-37483794	A549	lung:	n/a	n/a

Variant related genes	Relation type
ANKRD30A	TF binding region

Extended variants
information (count: 1821 )
Associated
traits (count: 44 )

Variant overlapped rSNPs/rCNVs (count:1821 , 50 per page) page: 1 2 3 4 5 6 7 ... 37

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs554150568	chr10:37436113-37436114	Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs573273366	chr10:37436139-37436140	Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs541864747	chr10:37436198-37436199	Bivalent/Poised TSS Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs184402683	chr10:37436239-37436240	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs200768299	chr10:37436267-37436268	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs544765048	chr10:37436326-37436327	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs201180196	chr10:37436348-37436349	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs564319804	chr10:37436363-37436364	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs368742296	chr10:37436367-37436368	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs546884549	chr10:37436371-37436372	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs201760233	chr10:37436394-37436395	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
12	rs528840320	chr10:37436432-37436433	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs375201053	chr10:37436444-37436445	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs548715889	chr10:37436497-37436498	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs200017300	chr10:37436513-37436514	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs74135268	chr10:37436573-37436574	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs200047492	chr10:37436580-37436581	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs117029961	chr10:37436581-37436582	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs571459070	chr10:37436590-37436591	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs370363608	chr10:37436620-37436621	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs554064494	chr10:37436625-37436626	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs189935080	chr10:37436641-37436642	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
23	rs535808332	chr10:37436664-37436665	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs553475035	chr10:37436670-37436671	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs555499057	chr10:37436689-37436690	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs368861935	chr10:37436700-37436701	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs575624080	chr10:37436701-37436702	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs371077062	chr10:37436725-37436726	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs192763856	chr10:37436734-37436735	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs564286963	chr10:37436760-37436761	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs113428553	chr10:37436799-37436800	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs377385442	chr10:37436823-37436824	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
33	rs371825928	chr10:37436830-37436831	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs577768082	chr10:37436856-37436857	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs72787531	chr10:37436863-37436864	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs540435826	chr10:37436871-37436872	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs76638551	chr10:37436873-37436874	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs112110691	chr10:37436886-37436887	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs548819994	chr10:37436887-37436888	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs560379835	chr10:37436893-37436894	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs529579717	chr10:37436913-37436914	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs373305855	chr10:37436935-37436936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs184831914	chr10:37436992-37436993	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs549676813	chr10:37437001-37437002	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs560571163	chr10:37437005-37437006	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs562326559	chr10:37437056-37437057	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs531376374	chr10:37437081-37437082	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs551499944	chr10:37437120-37437121	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs138212727	chr10:37437130-37437131	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs527879299	chr10:37437169-37437170	Weak transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:44)

Disease	PMID	Source
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
Behavioral abnormalities	21522184	CNVD
Dysmorphic features	21522184	CNVD
Oral squamous cell carcinoma	17134496	CNVD
Bethlem myopathy	20302629	CNVD
Non-muscle invasive bladder neoplasm	19445696	CNVD
Glioblastoma multiforme	22286061	CNVD
small cell lung cancer	20016488	CNVD
Prostate cancer	18632612	CNVD
Hepatocellular carcinoma	16785998	CNVD
Myelofibrosis	22110671	CNVD
Barrett''s adenocarcinoma	18663352	CNVD
Breast cancer	21364760	CNVD
Non-syndromic sensorineural hearing loss	17122850	CNVD
Cancer	20164919	CNVD
Pancreatic cancer	17952125	CNVD
Breast cancer	22522925	CNVD
Non-syndromic sensorineural hearing loss	18451855	CNVD

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:37435600-37436200	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
2	chr10:37436000-37439000	Weak transcription	A549	lung
3	chr10:37439000-37439400	Active TSS	A549	lung
4	chr10:37439400-37441200	Weak transcription	A549	lung
5	chr10:37441200-37441400	Enhancers	A549	lung
6	chr10:37446400-37447200	Weak transcription	A549	lung
7	chr10:37447800-37448400	ZNF genes & repeats	A549	lung
8	chr10:37448400-37454800	Weak transcription	A549	lung
9	chr10:37454800-37455200	Enhancers	A549	lung
10	chr10:37479600-37490800	Weak transcription	A549	lung
11	chr10:37490800-37491200	Strong transcription	A549	lung
12	chr10:37491200-37507600	Weak transcription	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links