Variant report

Variant	esv1795981
Chromosome Location	chr10:22223984-22253054
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:30)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:30 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:22229594..22232374-chr10:22242414..22244452,2	K562	blood:
2	chr10:22236715..22238334-chr10:22247305..22250180,2	MCF-7	breast:
3	chr10:22250502..22253425-chr10:22270615..22273488,2	MCF-7	breast:
4	chr10:22242968..22244990-chr10:22246695..22248467,2	K562	blood:
5	chr10:22205794..22208570-chr10:22230476..22232401,2	K562	blood:
6	chr10:22229594..22232374-chr10:22242414..22244452,2	K562	blood:
7	chr10:21927715..21928325-chr10:22242639..22243407,2	MCF-7	breast:
8	chr10:21814305..21816116-chr10:22234558..22236212,2	MCF-7	breast:
9	chr10:22236715..22238334-chr10:22247305..22250180,2	MCF-7	breast:
10	chr10:21784522..21785281-chr10:22242169..22242778,2	MCF-7	breast:
11	chr10:21817854..21820213-chr10:22227825..22230659,2	K562	blood:
12	chr10:22225011..22227035-chr10:22229245..22230801,2	K562	blood:
13	chr10:22238836..22240855-chr10:22243838..22246285,2	K562	blood:
14	chr1:229794584..229795424-chr10:22242563..22243074,2	MCF-7	breast:
15	chr10:22233292..22234846-chr10:22241021..22243031,2	MCF-7	breast:
16	chr10:22233292..22234846-chr10:22241021..22243031,2	MCF-7	breast:
17	chr10:21813306..21818434-chr10:22241964..22245286,5	MCF-7	breast:
18	chr10:22021373..22022327-chr10:22242288..22243146,2	K562	blood:
19	chr10:22242968..22244990-chr10:22246695..22248467,2	K562	blood:
20	chr10:22252550..22254271-chr10:22609728..22611499,2	MCF-7	breast:
21	chr10:21821191..21822728-chr10:22232911..22234926,2	MCF-7	breast:
22	chr10:22238836..22240855-chr10:22243838..22246285,2	K562	blood:
23	chr10:22225011..22227035-chr10:22229245..22230801,2	K562	blood:
24	chr10:22227754..22229400-chr10:22229799..22232421,2	K562	blood:
25	chr10:21817630..21819800-chr10:22242694..22244744,2	K562	blood:
26	chr10:22227754..22229400-chr10:22229799..22232421,2	K562	blood:
27	chr10:22251092..22253424-chr10:23344303..23346023,2	K562	blood:
28	chr10:22244305..22247068-chr10:22628599..22631062,2	K562	blood:
29	chr10:22238303..22241038-chr10:22603806..22605933,2	K562	blood:
30	chr10:21814692..21817534-chr10:22231739..22234440,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000272366	chromatin interactions
ENSG00000168283	chromatin interactions
ENSG00000180592	chromatin interactions
ENSG00000269897	chromatin interactions
ENSG00000148444	chromatin interactions

Extended variants
information (count: 945 )
Associated
traits (count: 42 )

Variant overlapped rSNPs/rCNVs (count:945 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs12360256	chr10:22223984-22223985	ZNF genes & repeats Weak transcription	n/a	n/a	Overlapped CNVs	n/a
2	rs534147842	chr10:22224005-22224006	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
3	rs547395384	chr10:22224025-22224026	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
4	rs148865724	chr10:22224035-22224036	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
5	rs115956802	chr10:22224063-22224064	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
6	rs112821409	chr10:22224068-22224069	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
7	rs147633568	chr10:22224093-22224094	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
8	rs116031280	chr10:22224149-22224150	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
9	rs142252890	chr10:22224195-22224196	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
10	rs574459323	chr10:22224198-22224199	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
11	rs540365106	chr10:22224202-22224203	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
12	rs111610447	chr10:22224224-22224225	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
13	rs531812787	chr10:22224238-22224239	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
14	rs77181227	chr10:22224244-22224245	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
15	rs375134588	chr10:22224248-22224249	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
16	rs576941031	chr10:22224296-22224297	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
17	rs532813502	chr10:22224315-22224316	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
18	rs546103259	chr10:22224318-22224319	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
19	rs562786722	chr10:22224322-22224323	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
20	rs531502402	chr10:22224326-22224327	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
21	rs146435295	chr10:22224345-22224346	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
22	rs562169805	chr10:22224349-22224350	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
23	rs375088969	chr10:22224401-22224402	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
24	rs571664544	chr10:22224410-22224411	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
25	rs372099497	chr10:22224429-22224430	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
26	rs527772602	chr10:22224493-22224494	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
27	rs547514979	chr10:22224548-22224549	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
28	rs114751771	chr10:22224573-22224574	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
29	rs539466596	chr10:22224577-22224578	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
30	rs182175700	chr10:22224591-22224592	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
31	rs550035474	chr10:22224594-22224595	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
32	rs371549718	chr10:22224598-22224599	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
33	rs570256925	chr10:22224600-22224601	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
34	rs187218187	chr10:22224643-22224644	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
35	rs556586944	chr10:22224653-22224654	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
36	rs555674432	chr10:22224674-22224675	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
37	rs574763169	chr10:22224719-22224720	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
38	rs572647892	chr10:22224734-22224735	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
39	rs533849644	chr10:22224746-22224747	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
40	rs371313530	chr10:22224783-22224784	Weak transcription ZNF genes & repeats	n/a	n/a	Overlapped CNVs	n/a
41	rs189180114	chr10:22224802-22224803	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs181074658	chr10:22224819-22224820	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs556448575	chr10:22224845-22224846	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs566114105	chr10:22224847-22224848	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
45	rs185916047	chr10:22224895-22224896	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs536541513	chr10:22224904-22224905	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs576264972	chr10:22224947-22224948	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs542145950	chr10:22224971-22224972	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs554614869	chr10:22224984-22224985	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs190218743	chr10:22225099-22225100	Weak transcription ZNF genes & repeats Strong transcription	n/a	n/a	Overlapped CNVs	n/a

Variant related diseases (count:42)

Disease	PMID	Source
Breast cancer	17133270	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Breast cancer	17603634	CNVD
Endometrial cancer	22040021	CNVD
Glioblastoma multiforme	21080181	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Phyllodes tumor	17334353	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Lung cancer	18438408	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Ewing''s sarcoma	17952124	CNVD
Oral cancer	21386901	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Breast cancer	21858162	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Intracranial aneurysm	16715129	CNVD
Multiple myeloma	16616336	CNVD
T-cell lymphomas	19863542	CNVD
Esophageal cancer	21851588	CNVD
small cell lung cancer	20016488	CNVD
Olfactory neuroblastoma	18408657	CNVD
Breast cancer	21364760	CNVD
Glioblastoma multiforme	21525872	CNVD
Prostate cancer	18632612	CNVD
Cancer	17699850	CNVD
Ovarian cancer	17699850	CNVD
Acute lymphoblastic leukemia	18458336	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD
Cancer	20164919	CNVD

Chromatin state (count:204 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:22179000-22224000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr10:22188800-22229200	Weak transcription	Aorta	Aorta
3	chr10:22193000-22224200	Weak transcription	Primary B cells from cord blood	blood
4	chr10:22199600-22250800	Weak transcription	Pancreas	Pancrea
5	chr10:22215600-22228600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr10:22217200-22224800	Weak transcription	Placenta	Placenta
7	chr10:22219200-22225000	Weak transcription	Gastric	stomach
8	chr10:22222000-22228800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr10:22222200-22224800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:22222400-22224200	Weak transcription	K562	blood
11	chr10:22223400-22226400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
12	chr10:22223600-22224800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr10:22223800-22224000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr10:22223800-22224200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr10:22223800-22224400	ZNF genes & repeats	Primary T helper cells fromperipheralblood	blood
16	chr10:22224200-22224400	ZNF genes & repeats	Primary B cells from cord blood	blood
17	chr10:22224200-22225200	ZNF genes & repeats	K562	blood
18	chr10:22224600-22225200	ZNF genes & repeats	Liver	Liver
19	chr10:22224600-22225200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
20	chr10:22224800-22225000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr10:22224800-22225200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr10:22224800-22225200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr10:22225000-22225200	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
24	chr10:22225000-22225200	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr10:22225000-22225200	ZNF genes & repeats	Gastric	stomach
26	chr10:22225000-22225400	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
27	chr10:22225200-22225600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr10:22225200-22227800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr10:22225200-22228800	Weak transcription	Liver	Liver
30	chr10:22225200-22232200	Weak transcription	K562	blood
31	chr10:22225200-22232400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr10:22225200-22236800	Weak transcription	Gastric	stomach
33	chr10:22225600-22226000	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr10:22226000-22226200	Enhancers	Pancreatic Islets	Pancreatic Islet
35	chr10:22226200-22233600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr10:22226400-22232400	Weak transcription	Primary hematopoietic stem cells	blood
37	chr10:22227600-22228400	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
38	chr10:22227800-22228200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr10:22227800-22229800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
40	chr10:22228400-22228800	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr10:22228400-22228800	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr10:22228400-22229000	Enhancers	iPS-15b Cell Line	embryonic stem cell
43	chr10:22228400-22232400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr10:22228600-22228800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
45	chr10:22228600-22229000	Enhancers	ES-I3 Cell Line	embryonic stem cell
46	chr10:22228600-22229000	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr10:22228800-22229000	Enhancers	Liver	Liver
48	chr10:22228800-22232400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr10:22229000-22232400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr10:22232000-22232400	Enhancers	Monocytes-CD14+_RO01746	blood

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