Variant report

Variant	esv1796143
Chromosome Location	chr10:90156447-90168074
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:90161662..90162205-chr10:90312601..90313346,2	MCF-7	breast:
2	chr10:89610488..89611143-chr10:90161415..90162330,2	MCF-7	breast:
3	chr10:89622921..89625081-chr10:90159029..90160699,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171862	chromatin interactions
ENSG00000227268	chromatin interactions

Extended variants
information (count: 373 )
Associated
traits (count: 91 )

Variant overlapped rSNPs/rCNVs (count:373 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs1774977	chr10:90156447-90156448	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs35417528	chr10:90156463-90156464	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
3	rs141229725	chr10:90156499-90156500	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
4	rs546215111	chr10:90156523-90156524	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
5	rs150716826	chr10:90156558-90156559	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
6	rs545954122	chr10:90156627-90156628	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
7	rs564584869	chr10:90156687-90156688	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
8	rs111341453	chr10:90156710-90156711	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
9	rs572989984	chr10:90156831-90156832	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
10	rs540422114	chr10:90156853-90156854	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
11	rs1935584	chr10:90156854-90156855	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
12	rs529152488	chr10:90156902-90156903	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
13	rs550601156	chr10:90156935-90156936	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
14	rs562308438	chr10:90156948-90156949	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
15	rs576174103	chr10:90156977-90156978	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
16	rs533067988	chr10:90157027-90157028	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
17	rs551214643	chr10:90157029-90157030	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
18	rs544491197	chr10:90157051-90157052	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
19	rs1935585	chr10:90157054-90157055	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
20	rs534927437	chr10:90157065-90157066	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
21	rs546786538	chr10:90157134-90157135	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
22	rs7897033	chr10:90157146-90157147	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
23	rs529857899	chr10:90157158-90157159	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
24	rs34962987	chr10:90157194-90157195	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
25	rs35480703	chr10:90157195-90157196	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
26	rs190746432	chr10:90157229-90157230	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
27	rs549401556	chr10:90157269-90157270	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
28	rs556958506	chr10:90157287-90157288	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
29	rs139058304	chr10:90157313-90157314	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
30	rs145284265	chr10:90157333-90157334	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
31	rs57709392	chr10:90157394-90157395	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
32	rs59816334	chr10:90157407-90157408	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
33	rs540434497	chr10:90157422-90157423	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
34	rs185564400	chr10:90157444-90157445	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
35	rs573997941	chr10:90157629-90157630	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
36	rs190326159	chr10:90157673-90157674	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
37	rs182651244	chr10:90157720-90157721	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
38	rs187743824	chr10:90157721-90157722	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
39	rs544979395	chr10:90157736-90157737	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
40	rs147211203	chr10:90157746-90157747	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
41	rs527345311	chr10:90157749-90157750	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
42	rs546806679	chr10:90157769-90157770	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
43	rs375536550	chr10:90157770-90157771	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
44	rs4933478	chr10:90157771-90157772	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a
45	rs371175848	chr10:90157777-90157778	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
46	rs574598820	chr10:90157780-90157781	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
47	rs373883957	chr10:90157882-90157883	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
48	rs567764983	chr10:90157885-90157886	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
49	rs193250810	chr10:90157920-90157921	Weak transcription	n/a	n/a	Overlapped CNVs	n/a
50	rs2488270	chr10:90157930-90157931	Weak transcription	n/a	n/a	LD-proxies of rSNP Overlapped rCNV	n/a

Variant related diseases (count:91)

Disease	PMID	Source
Gastric cancer	17908304	CNVD
Chordoma	21602918	CNVD
Ewing''s sarcoma	21437220	CNVD
Glioblastoma multiforme	21080181	CNVD
Medulloblastoma	21979893	CNVD
Melanoma	18172304	CNVD
Pleomorphic xanthoastrocytoma	20730472	CNVD
Ewing''s sarcoma	17952124	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Acute lymphoblastic leukemia	20724749	CNVD
Autism	22495311	CNVD
Prostate cancer	18632612	CNVD
Cockayne syndrome	18421352	CNVD
Glioblastoma	16823260	CNVD
Medulloblastoma	16968546	CNVD
Neuroblastoma	17533364	CNVD
Squamous cell cancer	21044232	CNVD
Glioma	21971842	CNVD
Cancer	21637783	CNVD
Non-small cell lung cancer	21044232	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Lung cancer	18438408	CNVD
Endometrioid adenocarcinoma	16974079	CNVD
Usher syndrome	20538994	CNVD
Medulloblastoma	16783165	CNVD
Breast cancer	21785460	CNVD
Acute myeloid leukemia	20729466	CNVD
Prostate cancer	16573809	CNVD
Paraganglioma	17535989	CNVD
Submicroscopic aberration syndrome	21292638	CNVD
Gastrointestinal stromal cancer	17535989	CNVD
Pancreatic endocrine tumor	17639061	CNVD
Pulmonary chondroma	17535989	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Colorectal cancer	18645599	CNVD
Polyposis syndrome	18645599	CNVD
Prostate cancer	17245344	CNVD
Glioblastoma multiforme	17369134	CNVD
Glioblastoma multiforme	21750150	CNVD
Breast cancer	22032731	CNVD
Ovarian cancer	20844748	CNVD
Glioblastoma multiforme	17002787	CNVD
Astrocytoma	17387387	CNVD
Breast cancer	17603634	CNVD
Glioblastoma multiforme	17387387	CNVD
low-grade B-cell lymphoma tumor	18367492	CNVD
Breast cancer	21364760	CNVD
T-cell acute lymphoblastic leukemia	19406988	CNVD
High-grade prostatic intraepithelial neoplasia	16573809	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Wilms tumour	21544195	CNVD
Cancer	20164919	CNVD
Melanoma	17363583	CNVD
small cell lung cancer	20016488	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Urothelial carcinoma	21177765	CNVD
Cancer	20164920	CNVD
Esophageal adenocarcinoma	18519675	CNVD
Colorectal cancer	19359472	CNVD
Neurocytoma	17123091	CNVD
Prostate cancer	16461572	CNVD
Basal-like breast cancer	18066063	CNVD
Effusion lymphoma	18079361	CNVD
Prostate cancer	21147910	CNVD
Lung cancer	21911935	CNVD
Myelofibrosis	22110671	CNVD
Prostate cancer	21088497	CNVD
Breast cancer	22048815	CNVD
Cutaneous T-cell lymphoma	21881587	CNVD
Glioblastoma multiforme	22291905	CNVD
Glioblastoma multiforme	19435819	CNVD
Glioblastoma multiforme	22286061	CNVD
Intracranial ependymoma	16609018	CNVD
Breast cancer	16397240	CNVD
Chronic lymphocytic leukemia	21049055	CNVD
Cervical cancer	21062161	CNVD
Non-small cell lung cancer	21829676	CNVD
Melanoma	24453001	CNVD
Breast cancer	16608533	CNVD
Breast cancer	22522925	CNVD
T-cell lymphomas	22341440	CNVD
Melanoma	20877625	CNVD
Ependymoma	20639864	CNVD

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:90156000-90161600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr10:90158800-90159400	ZNF genes & repeats	Fetal Lung	lung
3	chr10:90159400-90164400	Weak transcription	Fetal Lung	lung
4	chr10:90159600-90159800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
5	chr10:90159800-90172800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr10:90160400-90165000	Enhancers	Liver	Liver
7	chr10:90161400-90161800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr10:90161400-90161800	Enhancers	Hela-S3	cervix
9	chr10:90161600-90161800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr10:90161600-90161800	Enhancers	GM12878-XiMat	blood
11	chr10:90161600-90162200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr10:90161600-90162200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr10:90161800-90162400	Weak transcription	GM12878-XiMat	blood
14	chr10:90162400-90162600	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr10:90162400-90163000	Enhancers	GM12878-XiMat	blood
16	chr10:90162800-90164200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr10:90164200-90164800	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr10:90164200-90164800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr10:90164200-90164800	Enhancers	Duodenum Smooth Muscle	Duodenum
20	chr10:90164200-90164800	Enhancers	Monocytes-CD14+_RO01746	blood
21	chr10:90164200-90165000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr10:90164400-90164600	Enhancers	Fetal Lung	lung
23	chr10:90164400-90164800	Enhancers	HSMMtube	muscle
24	chr10:90164400-90165000	Enhancers	Primary monocytes fromperipheralblood	blood
25	chr10:90164800-90167400	Weak transcription	Monocytes-CD14+_RO01746	blood
26	chr10:90164800-90167600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
27	chr10:90165000-90167400	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr10:90165000-90167600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr10:90167400-90168400	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr10:90167400-90168400	Enhancers	Primary B cells from cord blood	blood
31	chr10:90167400-90168400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
32	chr10:90167400-90169000	Enhancers	GM12878-XiMat	blood
33	chr10:90167400-90169800	Enhancers	Primary neutrophils fromperipheralblood	blood
34	chr10:90167600-90168000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr10:90167600-90168200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr10:90167600-90168400	Enhancers	Primary hematopoietic stem cells short term culture	blood
37	chr10:90168000-90172800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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