Variant report

Variant	esv1796644
Chromosome Location	chr11:94226595-94227670
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:515)
CpG islands
(count:917)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:515 , 50 per page) page: 1 2 3 4 5 6 7 ... 11

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ARID3A	chr11:94226621-94227809	HepG2	liver:	n/a	n/a
2	ARID3A	chr11:94226817-94227053	K562	blood:	n/a	n/a
3	ATF1	chr11:94226839-94227255	K562	blood:	n/a	n/a
4	ATF2	chr11:94226652-94227512	GM12878	blood:	n/a	n/a
5	ATF2	chr11:94227299-94227715	H1-hESC	embryonic stem cell:	n/a	n/a
6	ATF2	chr11:94226375-94227236	H1-hESC	embryonic stem cell:	n/a	n/a
7	ATF2	chr11:94226566-94227214	GM12878	blood:	n/a	n/a
8	ATF2	chr11:94226438-94227189	H1-hESC	embryonic stem cell:	n/a	n/a
9	BACH1	chr11:94226529-94227423	H1-hESC	embryonic stem cell:	n/a	n/a
10	BHLHE40	chr11:94226647-94227663	K562	blood:	n/a	n/a
11	BHLHE40	chr11:94226945-94227545	GM12878	blood:	n/a	n/a
12	BRCA1	chr11:94226371-94227630	H1-hESC	embryonic stem cell:	n/a	chr11:94227016-94227025
13	BRCA1	chr11:94226675-94227414	GM12878	blood:	n/a	chr11:94227016-94227025
14	BRCA1	chr11:94226782-94227267	HepG2	liver:	n/a	chr11:94227016-94227025
15	BRCA1	chr11:94226214-94228062	Hela-S3	cervix:	n/a	chr11:94227016-94227025
16	CBX3	chr11:94226404-94227578	K562	blood:	n/a	n/a
17	CCNT2	chr11:94227031-94227510	K562	blood:	n/a	chr11:94227089-94227098
18	CEBPB	chr11:94226446-94227029	H1-hESC	embryonic stem cell:	n/a	n/a
19	CEBPB	chr11:94227274-94227398	K562	blood:	n/a	n/a
20	CEBPB	chr11:94226437-94227421	Hela-S3	cervix:	n/a	chr11:94227066-94227074
21	CHD1	chr11:94227248-94227585	H1-hESC	embryonic stem cell:	n/a	n/a
22	CHD1	chr11:94226299-94226643	GM12878	blood:	n/a	n/a
23	CHD1	chr11:94226278-94227020	H1-hESC	embryonic stem cell:	n/a	n/a
24	CHD1	chr11:94226844-94227595	GM12878	blood:	n/a	chr11:94227016-94227025
25	CHD2	chr11:94226396-94227568	HepG2	liver:	n/a	chr11:94227016-94227025
26	CHD2	chr11:94226388-94227648	Hela-S3	cervix:	n/a	chr11:94227016-94227025
27	CHD2	chr11:94226427-94227776	H1-hESC	embryonic stem cell:	n/a	chr11:94227016-94227025
28	CHD2	chr11:94226349-94227541	K562	blood:	n/a	chr11:94227016-94227025
29	CHD2	chr11:94226306-94227671	GM12878	blood:	n/a	chr11:94227016-94227025
30	CREB1	chr11:94226423-94227560	GM12878	blood:	n/a	n/a
31	CREB1	chr11:94226893-94227217	A549	lung:	n/a	n/a
32	CREB1	chr11:94226788-94227293	A549	lung:	n/a	n/a
33	CREB1	chr11:94226488-94227658	HepG2	liver:	n/a	n/a
34	CREB1	chr11:94226821-94227301	ECC-1	luminal epithelium:	n/a	n/a
35	CTBP2	chr11:94226538-94227547	H1-hESC	embryonic stem cell:	n/a	n/a
36	CTCF	chr11:94227389-94227398	MCF-7	breast:	n/a	n/a
37	CTCF	chr11:94226790-94227539	K562	blood:	n/a	chr11:94227410-94227423 chr11:94227306-94227314
38	CTCF	chr11:94227240-94227390	GM12870	blood:	n/a	chr11:94227306-94227314
39	CTCF	chr11:94227180-94227450	Caco-2	colon:	n/a	chr11:94227410-94227423 chr11:94227306-94227314
40	CTCF	chr11:94227300-94227450	HPF	lung:	n/a	chr11:94227410-94227423 chr11:94227306-94227314
41	CTCF	chr11:94227360-94227510	HCFaa	heart:	n/a	chr11:94227410-94227423
42	CTCF	chr11:94227273-94227353	GM12891	blood:	n/a	chr11:94227306-94227314
43	CTCF	chr11:94226900-94227050	AG09319	gingival:	n/a	n/a
44	CTCF	chr11:94227320-94227470	AG04449	skin:	n/a	chr11:94227410-94227423
45	CTCF	chr11:94227520-94227670	NHLF	lung:	n/a	n/a
46	CTCF	chr11:94227159-94227537	GM12878	blood:	n/a	chr11:94227410-94227423 chr11:94227306-94227314
47	CTCF	chr11:94227140-94227290	GM12867	blood:	n/a	n/a
48	CTCF	chr11:94227380-94227530	SAEC	small airway:	n/a	chr11:94227410-94227423
49	CTCF	chr11:94227380-94227530	GM06990	blood:	n/a	chr11:94227410-94227423
50	CTCF	chr11:94227355-94227364	GM12891	blood:	n/a	n/a

(count:917 , 50 per page) page: 1 2 3 4 5 6 7 ... 19

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:94227081-94227131	BJ	skin:	n/a
2	chr11:94227180-94227230	AG04449	skin:	fetal
3	chr11:94227081-94227131	BJ	skin:	n/a
4	chr11:94227180-94227230	AG04449	skin:	fetal
5	chr11:94227380-94227430	AG04449	skin:	fetal
6	chr11:94227006-94227056	SAEC	small airway:	n/a
7	chr11:94227006-94227056	H1-hESC	embryonic stem cell:	embryo
8	chr11:94227411-94227461	A549	lung:	n/a
9	chr11:94227583-94227633	GM19239	blood:	n/a
10	chr11:94227380-94227430	HRE	kidney:	n/a
11	chr11:94227320-94227370	IMR90	lung:	fetal
12	chr11:94227583-94227633	PrEC	prostate:	n/a
13	chr11:94227320-94227370	CMK	blood:	n/a
14	chr11:94227411-94227461	HIPEpiC	eye:	n/a
15	chr11:94227006-94227056	AG04450	lung:	fetal
16	chr11:94227320-94227370	HAEpiC	amniotic membrane:	n/a
17	chr11:94227125-94227175	MCF10A-Er-Src	breast:	n/a
18	chr11:94226767-94226817	HCM	heart:	n/a
19	chr11:94226991-94227041	SAEC	small airway:	n/a
20	chr11:94227106-94227156	GM19239	blood:	n/a
21	chr11:94227583-94227633	H1-hESC	embryonic stem cell:	embryo
22	chr11:94226767-94226817	GM12892	blood:	n/a
23	chr11:94227583-94227633	HRE	kidney:	n/a
24	chr11:94227038-94227088	HNPCEpiC	eye:	n/a
25	chr11:94227380-94227430	MCF10A-Er-Src	breast:	n/a
26	chr11:94227183-94227233	SKMC	muscle:	n/a
27	chr11:94227106-94227156	NT2-D1	testis:	n/a
28	chr11:94226991-94227041	HAEpiC	amniotic membrane:	n/a
29	chr11:94227106-94227156	GM12892	blood:	n/a
30	chr11:94226925-94226975	LNCaP	prostate:	n/a
31	chr11:94227320-94227370	T-47D	breast:	n/a
32	chr11:94227038-94227088	HRPEpiC	eye:	n/a
33	chr11:94227106-94227156	AG09319	gingival:	n/a
34	chr11:94226767-94226817	HepG2	liver:	n/a
35	chr11:94227109-94227159	HepG2	liver:	n/a
36	chr11:94226991-94227041	HCM	heart:	n/a
37	chr11:94227583-94227633	ovcar-3	ovarian:	n/a
38	chr11:94226767-94226817	HEK293	kidney:	embryo
39	chr11:94227081-94227131	PrEC	prostate:	n/a
40	chr11:94227081-94227131	HL-60	blood:	n/a
41	chr11:94227411-94227461	AG04450	lung:	fetal
42	chr11:94227125-94227175	Hepatocyte	liver:	n/a
43	chr11:94227180-94227230	HCF	heart:	n/a
44	chr11:94226925-94226975	AG04449	skin:	fetal
45	chr11:94227109-94227159	HRE	kidney:	n/a
46	chr11:94227081-94227131	HEEpiC	esophagus:	n/a
47	chr11:94227380-94227430	Jurkat	blood:	n/a
48	chr11:94227180-94227230	HIPEpiC	eye:	n/a
49	chr11:94227109-94227159	AoSMC	blood vessel:	n/a
50	chr11:94227180-94227230	NB4	blood:	n/a

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:94226544..94227246-chr17:33904994..33905713,2	Hela-S3	cervix:
2	chr11:93473689..93475609-chr11:94224502..94227416,2	K562	blood:
3	chr11:94225466..94228271-chr11:94275709..94278301,3	K562	blood:
4	chr11:94180184..94182302-chr11:94227182..94229296,2	K562	blood:
5	chr11:93860234..93863458-chr11:94225545..94228425,3	K562	blood:
6	chr11:94226700..94227357-chr19:7293430..7294141,2	Hela-S3	cervix:
7	chr11:94226287..94227152-chr12:49524847..49525416,2	Hela-S3	cervix:
8	chr11:93914625..93916953-chr11:94227203..94228744,2	MCF-7	breast:
9	chr11:94226771..94229140-chr11:94275887..94279295,4	K562	blood:
10	chr11:94226137..94228706-chr11:94300541..94302920,2	K562	blood:
11	chr11:94225979..94229384-chr11:94230397..94235421,9	K562	blood:

No data

Variant related genes	Relation type
ANKRD49	TF binding region
MRE11A	TF binding region
ANKRD49	CpG island
MRE11A	CpG island
ENSG00000166012	chromatin interactions
ENSG00000110218	chromatin interactions
ENSG00000171105	chromatin interactions
ENSG00000134627	chromatin interactions
ENSG00000258017	chromatin interactions
ENSG00000020922	chromatin interactions
ENSG00000168876	chromatin interactions
ENSG00000108733	chromatin interactions
ENSG00000123416	chromatin interactions
ENSG00000182919	chromatin interactions
ENSG00000006125	chromatin interactions
ENSG00000196371	chromatin interactions

Extended variants
information (count: 47 )
Associated
traits (count: 79 )

Variant overlapped rSNPs/rCNVs (count:47 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs13447585	chr11:94226595-94226596	Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
2	rs564666988	chr11:94226598-94226599	Active TSS Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
3	rs531843263	chr11:94226618-94226619	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
4	rs1009456	chr11:94226642-94226643	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	11 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
5	rs562090306	chr11:94226657-94226658	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
6	rs529240305	chr11:94226702-94226703	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
7	rs547346548	chr11:94226715-94226716	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
8	rs565739510	chr11:94226726-94226727	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
9	rs533429461	chr11:94226738-94226739	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
10	rs368201077	chr11:94226767-94226768	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
11	rs551604131	chr11:94226779-94226780	Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
12	rs13447584	chr11:94226803-94226804	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
13	rs537677127	chr11:94226906-94226907	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
14	rs13447583	chr11:94226908-94226909	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region Chromatin interactive region	12 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
15	rs186346746	chr11:94226951-94226952	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
16	rs1805363	chr11:94226952-94226953	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	Overlapped CNVs	mRNA abundance
17	rs535761251	chr11:94227022-94227023	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
18	rs36225299	chr11:94227025-94227026	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
19	rs1805360	chr11:94227029-94227030	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
20	rs572094670	chr11:94227034-94227035	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
21	rs539499769	chr11:94227047-94227048	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
22	rs548140725	chr11:94227061-94227062	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
23	rs13447582	chr11:94227087-94227088	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
24	rs576570834	chr11:94227093-94227094	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	Overlapped CNVs	n/a
25	rs12708334	chr11:94227098-94227099	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
26	rs11020802	chr11:94227125-94227126	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	13 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
27	rs372754388	chr11:94227166-94227167	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	11 gene(s)	Overlapped CNVs	n/a
28	rs573954970	chr11:94227182-94227183	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
29	rs12294513	chr11:94227208-94227209	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
30	rs559293353	chr11:94227210-94227211	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
31	rs13447581	chr11:94227222-94227223	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
32	rs36225301	chr11:94227231-94227232	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	Overlapped CNVs	n/a
33	rs551835758	chr11:94227308-94227309	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
34	rs370535610	chr11:94227336-94227337	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	Overlapped CNVs	n/a
35	rs563669721	chr11:94227368-94227369	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
36	rs531527344	chr11:94227371-94227372	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
37	rs36225295	chr11:94227394-94227395	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
38	rs549963866	chr11:94227414-94227415	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	9 gene(s)	Overlapped CNVs	n/a
39	rs13447580	chr11:94227423-94227424	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
40	rs568861409	chr11:94227464-94227465	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
41	rs13447579	chr11:94227477-94227478	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	7 gene(s)	LD-proxies of rSNP Overlapped rCNV	n/a
42	rs571431018	chr11:94227482-94227483	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
43	rs36225294	chr11:94227543-94227544	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
44	rs36224993	chr11:94227550-94227551	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
45	rs12574579	chr11:94227622-94227623	Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
46	rs191548470	chr11:94227647-94227648	Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	7 gene(s)	Overlapped CNVs	n/a
47	rs11020803	chr11:94227670-94227671	Active TSS Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	7 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance

Variant related diseases (count:79)

Disease	PMID	Source
Medulloblastoma	21979893	CNVD
Gastric cancer	17908304	CNVD
Multiple myeloma	20724749	CNVD
Wilms tumour	21544195	CNVD
Chronic lymphocytic leukemia	21546498	CNVD
Non-small cell lung cancer	21385341	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Acute myeloid leukemia	20729466	CNVD
Cancer	21637783	CNVD
Acute myeloid leukemia	16864856	CNVD
Chronic lymphocytic leukemia	21795749	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Neuroblastoma	21484798	CNVD
Ewing''s sarcoma	21437220	CNVD
Oral cancer	21386901	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	20837533	CNVD
Breast cancer	21264507	CNVD
Cervical cancer	21063398	CNVD
Glioblastoma multiforme	19960244	CNVD
Liposarcoma	21253554	CNVD
Neuroblastoma	18923524	CNVD
Neuroblastoma	18664255	CNVD
Monoclonal gammopathy of undetermined significance	17077331	CNVD
Multiple myeloma	17077331	CNVD
Neuroblastoma	17533364	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Glioblastoma multiforme	21080181	CNVD
Cancer	16751803	CNVD
Seminomas	18059402	CNVD
Cervical cancer	21062161	CNVD
Esophageal squamous carcinoma	18350619	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
lymphocytic leukemia	21291569	CNVD
Acute lymphoblastic leukemia	21339820	CNVD
Hodgkin''s lymphoma	17606441	CNVD
Neuroblastoma	18923191	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Cancer	22429812	CNVD
Breast cancer	16608533	CNVD
T-cell lymphomas	19863542	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	17690704	CNVD
Basal cell lymphoma	17053054	CNVD
Hepatocellular carcinoma	16785998	CNVD
Acute lymphoblastic leukemia	22237106	CNVD
Acute myeloid leukemia	21251322	CNVD
Breast cancer	21858162	CNVD
Breast cancer	21785460	CNVD
Cancer	22183965	CNVD
Melanoma	22183965	CNVD
Developmental delay	21147756	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	21958427	CNVD
Lung cancer	18438408	CNVD
Ewing''s sarcoma	17952124	CNVD
Renal cell carcinoma	18194544	CNVD
Malignant fibrous histiocytomas	21085701	CNVD
Breast cancer	17133270	CNVD
T-cell prolymphocytic leukemia	17713554	CNVD
Acute lymphoblastic leukemia	21098271	CNVD
Ductal carcinoma	22052326	CNVD
Breast cancer	21364760	CNVD
small cell lung cancer	20016488	CNVD
Mental retardation	21062444	CNVD
Cancer	21499728	CNVD
Breast cancer	19181860	CNVD
Breast cancer	17603634	CNVD
Mantle cell lymphoma	19029149	CNVD
T-cell acute lymphoblastic leukemia	18185524	CNVD
Basal cell lymphoma	16790693	CNVD
Breast cancer	21509527	CNVD
Prostate cancer	18632612	CNVD
Cancer	20164919	CNVD
Breast cancer	22522925	CNVD
Pancreatic cancer	17952125	CNVD

Chromatin state (count:220 , 50 per page) page: 1 2 3 4 5

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:94217000-94226600	Weak transcription	Spleen	Spleen
2	chr11:94225200-94227000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr11:94225400-94227600	Active TSS	Primary hematopoietic stem cells short term culture	blood
4	chr11:94225400-94228200	Active TSS	HUES48 Cell Line	embryonic stem cell
5	chr11:94225600-94228000	Active TSS	GM12878-XiMat	blood
6	chr11:94225600-94228000	Active TSS	K562	blood
7	chr11:94225600-94228200	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr11:94225600-94228200	Active TSS	A549	lung
9	chr11:94225600-94228600	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:94225800-94226600	Flanking Active TSS	Primary T cells from cord blood	blood
11	chr11:94225800-94226600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
12	chr11:94225800-94226600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
13	chr11:94225800-94226600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
14	chr11:94225800-94226600	Flanking Active TSS	Brain Substantia Nigra	brain
15	chr11:94225800-94226600	Flanking Active TSS	Duodenum Mucosa	Duodenum
16	chr11:94225800-94226600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
17	chr11:94225800-94226800	Flanking Active TSS	Primary hematopoietic stem cells	blood
18	chr11:94225800-94226800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:94225800-94226800	Active TSS	HepG2	liver
20	chr11:94225800-94227200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr11:94225800-94227800	Active TSS	H9 Cell Line	embryonic stem cell
22	chr11:94225800-94228000	Active TSS	ES-I3 Cell Line	embryonic stem cell
23	chr11:94225800-94228000	Active TSS	HUES64 Cell Line	embryonic stem cell
24	chr11:94225800-94228000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
25	chr11:94225800-94228000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr11:94225800-94228000	Active TSS	Hela-S3	cervix
27	chr11:94225800-94228200	Active TSS	Right Atrium	heart
28	chr11:94225800-94228400	Active TSS	HUES6 Cell Line	embryonic stem cell
29	chr11:94226000-94226600	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
30	chr11:94226000-94226600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
31	chr11:94226000-94226600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
32	chr11:94226000-94226600	Flanking Active TSS	Liver	Liver
33	chr11:94226000-94226600	Flanking Active TSS	Brain Hippocampus Middle	brain
34	chr11:94226000-94226600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
35	chr11:94226000-94226600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
36	chr11:94226000-94226600	Flanking Active TSS	HSMMtube	muscle
37	chr11:94226000-94226800	Flanking Active TSS	Primary B cells from cord blood	blood
38	chr11:94226000-94226800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr11:94226000-94226800	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr11:94226000-94227600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr11:94226000-94227600	Active TSS	Fetal Stomach	stomach
42	chr11:94226000-94227600	Active TSS	Thymus	Thymus
43	chr11:94226000-94227600	Active TSS	NH-A	brain
44	chr11:94226000-94227800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
45	chr11:94226000-94227800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr11:94226000-94227800	Active TSS	Muscle Satellite Cultured Cells	--
47	chr11:94226000-94227800	Active TSS	Colonic Mucosa	Colon
48	chr11:94226000-94227800	Active TSS	Fetal Intestine Large	intestine
49	chr11:94226000-94227800	Active TSS	Fetal Muscle Trunk	muscle
50	chr11:94226000-94227800	Active TSS	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links